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Eruca sativa Rocket Science RNA-seq

Metadata Updated: April 24, 2025

In the Rocket Science citizen science project Eruca sativa (salad rocket) seeds stored for six months on board of the International Space Station caused delayed crop establishment. Here we investigated the physiological and molecular mechanisms underpinning the spaceflight effects on dry seeds. We found that Space seed germination vigor was reduced and aging sensitivity increased but the spaceflight did not compromise seed viability and the development of normal seedlings. Comparative analysis of the transcriptomes (using RNASeq) in dry seeds and upon controlled artificial aging treatment (CAAT) revealed differentially expressed genes (DEGs) associated with spaceflight and ageing. DEG categories enriched by spaceflight and CAAT included transcription and translation with reduced transcript abundances for 40S and 60S ribosomal subunit genes. Among the spaceflight-up DEGs were Heat Shock Protein (HSP) DNAJ-related chaperones a Heat Shock Factor (HSFA7a-like) and components of several DNA repair pathways (e.g. ATM DNA ligase1). The response to radiation category was especially enriched in spaceflight-up DEGs including HSPs catalases and the transcription factor HY5. The major finding from the physiological and transcriptome analysis is that spaceflight causes vigor loss and partial ageing during air-dry seed storage for which space environmental factors and consequences for seed storage during spaceflights are discussed.

Access & Use Information

Public: This dataset is intended for public access and use. License: us-pd

Downloads & Resources

Dates

Metadata Created Date February 1, 2023
Metadata Updated Date April 24, 2025
Data Update Frequency irregular

Metadata Source

Harvested from NASA Data.json

Additional Metadata

Resource Type Dataset
Metadata Created Date February 1, 2023
Metadata Updated Date April 24, 2025
Publisher National Aeronautics and Space Administration
Maintainer
Identifier nasa_genelab_GLDS-301_xx28-ywgh
Data First Published 2021-05-21
Data Last Modified 2025-04-23
Category Earth Science
Public Access Level public
Data Update Frequency irregular
Bureau Code 026:00
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id d6484b8a-54eb-40f0-b144-746d5b61fc37
Harvest Source Id 58f92550-7a01-4f00-b1b2-8dc953bd598f
Harvest Source Title NASA Data.json
Homepage URL https://data.nasa.gov/dataset/eruca-sativa-rocket-science-rna-seq
License http://www.usa.gov/publicdomain/label/1.0/
Program Code 026:005
Source Datajson Identifier True
Source Hash 3f58e383624b1b426ef3ce12cbd6eb33843fe03da1b9953ce2c4bf720a7b26c0
Source Schema Version 1.1

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