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options.paraflags = excerptModule.numberFlags(args.paragraphs or "") -- parse paragraphs, e.g. "1,3-5" → {"1","3-5"}
options.fileflags = excerptModule.numberFlags(args.files or "") -- parse file numbers
options.ignoreOnlyincludes = options.ignoreOnlyincludes == nil and true or options.ignoreOnlyincludes -- default to true
if args.nostubs and isDeclined(args.nostubs) then
options.nostubs = false
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