Wikipedia

Module:Infobox gene: Difference between revisions

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Content deleted Content added
m collapsed RNA expression data (otherwise infobox overwhelms many gene wiki articles)
Much more elegant dark mode fix; see talk
 
(11 intermediate revisions by 5 users not shown)
Line 6:
 
--define Global Color Scheme
local rowBGcolor = 'light-dark(#eee, #27292d) !important' --'var(--background-color-neutral)'
local titleBGcolor = 'light-dark(#ddd, #404244) !important'
local sideTitleBGcolor = 'light-dark(#c3fdb8, #003500) !important'
 
-- wrapped "protected call", return "value error" with error info on error
Line 20:
return("'''VALUE_ERROR''' (" .. tostring(val) .. ")")
end
end
 
local function trim(s)
return (s:gsub("^%s*(.-)%s*$", "%1"))
end
 
Line 196 ⟶ 200:
p.renderImage(image)
p.renderAvailableStructures(uniprotID_hs, uniprotID_mm, checkOrtholog, pdbIDs) --PDB info
p.renderIdentifiers(aliases, hgnc_id, gene_symbol, homologene_id, omim_id, mgi_id, ChEMBL_id, IUPHAR_id, ec_no, entrez_gene, ensembl)
--uncomment here to add a section of the infobox about genetically related diseases, with references
--if (disease ~= "" and dis_ref ~= "") then --removes section from those items without disease info
Line 240 ⟶ 244:
:css('clear', 'none')
:css('float', 'none')
:css('background-color', 'transparent')
 
else
Line 248 ⟶ 251:
-- infobox modules in addition to the class. Be sure to check them out.
:addClass('infobox')
--this template needs a stylesheet and a 'infobox-gene' class
:css('width', '26.4em')
end
Line 325 ⟶ 329:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:css('padding', '0')
Line 336 ⟶ 341:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 344 ⟶ 350:
:attr('rowspan', '2')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:css('width', '43px')
:wikitext(pdb_link)
Line 350 ⟶ 357:
:attr('colspan', '2')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext(searchTitle)
:tag('span')
Line 369 ⟶ 377:
:css('text-align', 'left')
:tag('tr')
:css('backgroundtext-coloralign', titleBGcolor'center')
:css('text-align', 'center')
:tag('th')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:attr('colspan', '2')
:wikitext(listTitle)
Line 380 ⟶ 389:
:attr('colspan', '2')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('p')
:tag('span')
Line 399 ⟶ 409:
end
 
function p.renderIdentifiers(aliases, hgnc_id, gene_symbol, homologene_id, omim_id, mgi_id, ChEMBL_id, IUPHAR_id, ec_no, entrez_gene, ensembl)
local title = "Identifiers" --**lclz**
local label_aliases = "[[Gene nomenclature|Aliases]]" --**lclz**
Line 421 ⟶ 431:
aliases = string.gsub(aliases, ", $", "") --remove comma from end
local label_ext_id = "External IDs" --**lclz**
 
omim_id = string.gsub(omim_id, "%s", "")
local omim_list = mw.text.split(omim_id, localSeparatorStr)
Line 433 ⟶ 442:
end
end
omim = trim(string.gsub(omim, ", $"," ")) --remove comma from end
 
homologene_id = string.gsub(homologene_id, "%s", "")
local homolo_list = mw.text.split(homologene_id, localSeparatorStr)
Line 446 ⟶ 454:
end
end
homolo = trim(string.gsub(homolo, ", $"," ")) --remove comma from end
 
local genecards = "[[GeneCards]]"..": "
genecards = genecards.."[https://www.genecards.org/cgi-bin/carddisp.pl?gene="..gene_symbol.." "..gene_symbol.."] "
 
mgi_id = string.gsub(mgi_id, "%s", "")
local mgi_list = mw.text.split(mgi_id, localSeparatorStr)
Line 463 ⟶ 469:
end
end
mgi = trim(string.gsub(mgi, ", $"," ")) --remove comma from end
 
local ChEMBL = ""
if string.match(ChEMBL_id, '%w+') then
Line 471 ⟶ 476:
local IUPHAR = ""
if string.match(IUPHAR_id, '%w+') then
IUPHAR = "[[International_Union_of_Basic_and_Clinical_Pharmacology|IUPHAR]]"..": ".."[http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId="..IUPHAR_id.." "..IUPHAR_id.."] " --**lclz**
end -- *lclz*
local label_EC = "[[Enzyme_Commission_number|EC number]]" --**lclz**
Line 477 ⟶ 482:
ec_no = string.gsub(ec_no, "%d%.%d+%.%d+%.%-", "")--remove those with"-" not in list
local link_ec_no = string.gsub(ec_no, "," ,"+") --create format for link
 
local EC = "[https://www.genome.jp/dbget-bin/www_bget?enzyme+" .. link_ec_no .. " " .. ec_no .. "]"
local oma = "[[Orthologous_MAtrix|OMA]]:"
 
oma = oma.."[https://omabrowser.org/oma/vps/"..mw.text.split(ensembl,",")[1].." "..gene_symbol.." - orthologs]"
external_id_table = {omim, mgi, homolo, ChEMBL, IUPHAR, genecards, oma}
external_id_processed_table = {}
for i, v in ipairs(external_id_table) do
if (v ~= "") then
external_id_processed_table[#external_id_processed_table + 1] = v
end
end
external_ids = tostring(table.concat(external_id_processed_table, "; "))
root
:tag('tr')
Line 486 ⟶ 499:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 493 ⟶ 507:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 502 ⟶ 517:
:attr('colspan','3')
:css('background', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 515 ⟶ 531:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_ext_id)
:done() --end th
Line 520 ⟶ 537:
:attr('colspan', '3')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
:wikitext(omimexternal_ids)
:wikitext(mgi)
:wikitext(homolo)
:wikitext(ChEMBL)
:wikitext(IUPHAR)
:wikitext(genecards)
:done() --end span
:done() --end td
Line 538 ⟶ 551:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_EC)
:done() --end th
Line 543 ⟶ 557:
:attr('colspan', '3')
:css('background-color', rowBGcolor)
:tagcss('spancolor', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
:wikitext(EC)
Line 575 ⟶ 590:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('tr') --create title bar
:tag('th')
:attr('colspan', '3')
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 595 ⟶ 612:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:attr('scope', 'row')
:attr('colspan', '3')
Line 634 ⟶ 653:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('tr') --create title bar
:tag('th')
Line 639 ⟶ 659:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 657 ⟶ 678:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:attr('scope', 'row')
:attr('colspan', '3')
Line 753 ⟶ 776:
local source_link_chr, source_link_gstart, source_link_gend
if( db == "hg38" ) then
source_link_chr = frame:extensionTag("ref", "[http://May2017.archive.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g="..ensembl.." GRCh38: Ensembl release 89: "..ensembl.."] -– [[Ensembl genome database project|Ensembl]], May 2017", {name = "refGRCh38Ensembl"}) --**lclz**
source_link_gstart = frame:extensionTag("ref", "", {name = "refGRCh38Ensembl"})
source_link_gend = frame:extensionTag("ref", "", {name = "refGRCh38Ensembl"})
elseif( db == "hg37") then
source_link_chr = frame:extensionTag("ref", "[http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?db=core;&g="..ensembl.." GRCh37: Ensembl release 89: "..ensembl.."] -– [[Ensembl genome database project|Ensembl]], May 2017", {name = "refGRCh37Ensembl"}) --**lclz**
source_link_gstart = frame:extensionTag("ref", "", {name = "refGRCh37Ensembl"})
source_link_gend = frame:extensionTag("ref", "", {name = "refGRCh37Ensembl"})
Line 769 ⟶ 792:
if chr == "MT" then -- wikitext for mitochondrial DNA
--wikitext_for_ideogram_image = wikitext_for_ideogram_image.."<div align=\"center\">"
--wikitext_for_ideogram_image = wikitext_for_ideogram_image.."<div style=\"position\: relative\; width\: 300px\;\">"
--wikitext_for_ideogram_image = wikitext_for_ideogram_image.."[[File:Map of the human mitochondrial genome.svg|300px|"..chrText.."]]"
--wikitext_for_ideogram_image = wikitext_for_ideogram_image.."</div>"
Line 776 ⟶ 799:
else -- wikitext for autosome and sex chromosome
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."<div align=\"center\">"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."<div style=\"position\: relative\; width\: 300px\;\">"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."[[File:Human chromosome "..chr.." ideogram.svg|300px|"..chrText.."]]"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."<div style=\"position\: absolute\; left\: "..arrowSignLocation.."px\; top\: 2px\; padding\: 0\;\">"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."[[File:HSR 1996 II 3.5e.svg|"..arrowSign_width.."px|"..tooltip_arrowSign.."]]</div>"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."<div style=\"position\: absolute\; left\: "..markerLocation.."px\; top\: 19px\; padding\: 0\;\">[[File:Red rectangle "..markerWidth.."x18.png|"..markerWidth.."px|"..tooltip_arrowSign.."]]</div>"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."</div>"
wikitext_for_ideogram_image = wikitext_for_ideogram_image.."</div>"
Line 791 ⟶ 814:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:attr('class', 'collapsible collapsed')
Line 803 ⟶ 827:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(titleHuman)
:done() --end th
Line 811 ⟶ 836:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext("[[File:Ideogram human chromosome "..chr..".svg|300px|"..chrText.."]]")
:wikitext("[[File:Ideogram human chromosome "..chr..".svg|300px|"..chrText.."]]")
:done() --end td
:done() --end tr
Line 819 ⟶ 845:
:attr('width', '15%')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_chr)
:done() --end th
Line 825 ⟶ 852:
:attr('width', '85%')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 836 ⟶ 864:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext(wikitext_for_ideogram_image)
:done() --end td
Line 845 ⟶ 874:
:attr('width', '15%')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_locus)
:done() --end th
Line 851 ⟶ 881:
:attr('width', '35%')
:css('background-color', rowBGcolor)
:tagcss('spancolor', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
:wikitext(cytoband)
Line 859 ⟶ 890:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_gstart)
:done() --end th
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 873 ⟶ 906:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_gend)
:done() --end th
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 958 ⟶ 993:
--But as of now, Aug. 2017, it seems that all data which is stored in Wikidata are based on GRCm38/mm10.
--So treating mouse genomic data as GRCm38/mm10 if not specified.
source_link_chr_mm = frame:extensionTag("ref", "[http://May2017.archive.ensembl.org/Mus_musculus/Gene/Summary?db=core;g="..ensembl_mm.." GRCm38: Ensembl release 89: "..ensembl_mm.."] -&ndash; [[Ensembl genome database project|Ensembl]], May 2017", {name = "refGRCm38Ensembl"}) --**lclz**
source_link_gstart_mm = frame:extensionTag("ref", "", {name = "refGRCm38Ensembl"})
source_link_gend_mm = frame:extensionTag("ref", "", {name = "refGRCm38Ensembl"})
Line 969 ⟶ 1,004:
if chr_mm == "MT" then -- wikitext for mitochondrial DNA
--wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."<div align=\"center\">"
--wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."<div style=\"position\: relative\; width\: 300px\;\">"
--wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."[[File:Map of the human mitochondrial genome.svg|300px|"..chrText_mm.."]]"
--wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."</div>"
Line 976 ⟶ 1,011:
else -- wikitext for autosome and sex chromosome
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."<div align=\"center\">"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."<div style=\"position\: relative\; width\: 300px\;\">"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."[[File:Ideogram of house mouse chromosome "..chr_mm..".svg|300px|"..chrText_mm.."]]"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."<div style=\"position\: absolute\; left\: "..arrowSignLocation_mm.."px\; top\: 2px\; padding\: 0\;\">"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."[[File:HSR 1996 II 3.5e.svg|"..arrowSign_width.."px|"..tooltip_arrowSign.."]]</div>"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."<div style=\"position\: absolute\; left\: "..markerLocation_mm.."px\; top\: 19px\; padding\: 0\;\">[[File:Red rectangle "..markerWidth_mm.."x18.png|"..markerWidth_mm.."px|"..tooltip_arrowSign.."]]</div>"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."</div>"
wikitext_for_ideogram_image_mm = wikitext_for_ideogram_image_mm.."</div>"
Line 991 ⟶ 1,026:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:attr('class', 'collapsible collapsed')
Line 1,003 ⟶ 1,039:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(titleMouse)
:done() --end th
Line 1,011 ⟶ 1,048:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext("[[File:Ideogram house mouse chromosome "..chr_mm..".svg|260px|"..chrText_mm.."]]")
:done() --end td
Line 1,019 ⟶ 1,057:
:attr('width', '15%')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_chr)
:done() --end th
Line 1,025 ⟶ 1,064:
:attr('width', '85%')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 1,036 ⟶ 1,076:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext(wikitext_for_ideogram_image_mm)
:done() --end td
Line 1,045 ⟶ 1,086:
:attr('width', '15%')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_locus)
:done() --end th
Line 1,051 ⟶ 1,093:
:attr('width', '35%')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 1,059 ⟶ 1,102:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_gstart)
:done() --end th
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 1,073 ⟶ 1,118:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(label_gend)
:done() --end th
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 1,125 ⟶ 1,172:
function p.renderRNAexpression(expression_images, entrez_gene,
ensembl, bgee_expression, ensembl_mouse, bgee_expression_mouse)
local bgee_gene_page = "https://www.bgee.org/gene/"
local title = "[[Gene expression|RNA expression]] pattern" --**lclz**
local biogps_link = ""
Line 1,139 ⟶ 1,186:
local ensembl_id_mouse = string.match(ensembl_mouse,"%a+%d+") or ""
local bgee_title = "Bgee"
bgee_title = "[https://www.bgee.org/ " .. bgee_title .. "]"
local bgee_default = "["..bgee_gene_page..ensembl_id.." Top expressed in]"
bgee_expression = p.renderExpressionList(bgee_expression, bgee_default)
Line 1,161 ⟶ 1,208:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:attr('class', 'collapsible collapsed')
Line 1,173 ⟶ 1,221:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 1,180 ⟶ 1,229:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(bgee_title)
:done() --end th
Line 1,273 ⟶ 1,323:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 1,286 ⟶ 1,337:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(biogps_title)
:done() --end th
Line 1,301 ⟶ 1,353:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext(expression_images)
:done() --end td
Line 1,309 ⟶ 1,362:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('span')
:attr('class', 'plainlinks')
Line 1,338 ⟶ 1,392:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:attr('class', 'collapsible collapsed')
Line 1,350 ⟶ 1,405:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 1,356 ⟶ 1,412:
:tag('td')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:css('font-weight', 'bold')
:wikitext(mol_funct_title)
Line 1,361 ⟶ 1,418:
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('div')
:attr('class', 'plainlinks')
Line 1,371 ⟶ 1,429:
:tag('td')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:css('font-weight', 'bold')
:wikitext(cell_comp_title)
Line 1,376 ⟶ 1,435:
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('div')
:attr('class', 'plainlinks')
Line 1,386 ⟶ 1,446:
:tag('td')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:css('font-weight', 'bold')
:wikitext(bio_process_title)
Line 1,391 ⟶ 1,452:
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('div')
:attr('class', 'plainlinks')
Line 1,402 ⟶ 1,464:
:tag('td')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:css('text-align', 'center')
:attr('colspan', '4')
Line 1,423 ⟶ 1,486:
if chr == "MT" then
category_chromosome = '[[Category:Human mitochondrial genes]]'-- *lclz*: Category name for mtDNA genes
end
if chr == "" then
category_chromosome = '[[Category:Human genes]]' -- Per [[Wikipedia:Categories for discussion/Log/2023 August 15]]
end
if mw.title.getCurrentTitle().namespace ~= 0 then
Line 1,815 ⟶ 1,881:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:attr('class', 'collapsible collapsed')
:css('padding', '0')
:css('border', 'none')
Line 1,827 ⟶ 1,894:
:css('text-align', 'center')
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:wikitext(title)
:done() --end th
Line 1,834 ⟶ 1,902:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext("Species") --**lclz**
:done() --end th
Line 1,847 ⟶ 1,916:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(entrezTitle)
:done() --end th
Line 1,910 ⟶ 1,980:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(ensemblTitle)
:done() --end th
Line 1,973 ⟶ 2,044:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(uniprotTitle)
:done() --end th
Line 2,036 ⟶ 2,108:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(refseq_mRNATitle)
:done() --end th
Line 2,099 ⟶ 2,172:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(refseq_protTitle)
:done() --end th
Line 2,162 ⟶ 2,236:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(locTitle)
:done() --end th
Line 2,181 ⟶ 2,256:
:attr('scope', 'row')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:wikitext(pubmedTitle)
:done() --end th
Line 2,209 ⟶ 2,285:
:css('text-align', 'center')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:css('padding', '0')
Line 2,217 ⟶ 2,294:
:tag('tr') --create title header
:css('background-color', titleBGcolor)
:css('color', 'inherit')
:css('text-align', 'center')
:tag('th')
Line 2,249 ⟶ 2,327:
:attr('colspan', '4')
:css('text-align', 'center')
:css('font-size','x-small')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:wikitext(text)
:done() --end td
Line 2,257 ⟶ 2,335:
:attr('colspan', '4')
:css('text-align', 'center')
:css('font-size','x-small')
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:tag('table')
:css('padding', '0')
Line 2,269 ⟶ 2,347:
:attr('colspan', link_no_hs)
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:css('text-align', 'center')
:css('font-size','x-small')
:wikitext(hs_link)
:done() --end td
Line 2,276 ⟶ 2,354:
:attr('colspan', link_no_mm)
:css('background-color', rowBGcolor)
:css('color', 'inherit')
:css('text-align', 'center')
:css('font-size','x-small')
:wikitext(mm_link)
:done() --end td
Line 2,293 ⟶ 2,371:
:attr('rowspan', '2')
:css('background-color', sideTitleBGcolor)
:css('color', 'inherit')
:css('width', '43px')
:wikitext(label)
Retrieved from "https://en.wikipedia.org/wiki/Module:Infobox_gene"