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1) You used (lon, lat) and (lons, lats) coordinates, both of them wgs84, and asked why this map is shifting. It is impossible to understand "simple and straight" point when we follow jupyter notebook you shared. 2) Of course, maps will shift if you are projecting them and there is no solut...

lats= np.linspace(lat.min(),lat.max(),2400) this one is wrong. It should be

lats= np.linspace(lat.max(),lat.min(),2400)

hdf and netcdf files are stored latitude maximum to minimum (left to right). I think the problem is line 19 in your code. Latitude values need to decrease, not increase, in numpy array.

I have been trying to use TES-based LST products by using APPEARS software. Even though I followed quality standards defined in the user handbook, there are LST values that are unreasonable above physical limits, like more than 100 °C in Aqua night products. The exact pixel has a much more reasonabl...