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Serveral failures like this
Posted: Sat Aug 24, 2019 3:22 pm America/New_York
by OB.DAACx - SeanBailey
Brock,
It should be fine to drop the missing libraries into the opt/lib directory....make sure that all the links are correct.
For example, that libhdf5_hl.so.10.3.0 is a link :libhdf5_hl.so.10.3.0 -> libhdf5_hl.so.1.8.19
Sean
Serveral failures like this
Posted: Sat Aug 24, 2019 11:26 pm America/New_York
by oo_processing
Sean,
I think I got everything done correctly eg:
[optics0]$ ldd /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/bin/l2gen_new_753 | grep found
liboc.so => not found
libhdf5_hl.so.10.3.0 => not found
libhdf5.so.10.3.0 => not found
libboost_filesystem.so.1.69.0 => not found
libboost_date_time.so.1.69.0 => not found
libjansson.so.4 => not found
[optics0]$ ldd /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/bin/l2gen_new_753 | grep found
[optics0]$
However, I noticed that these two libboost_filesystem.so.1.69.0 and libboost_system.so.1.69.0
which have different links in the new version eg:
new
[optics0]$ ll /shares/cms_optics/apps/seadas-7.5.3/opt/lib/libboost_filesystem.so
lrwxrwxrwx 1 bmurch cms_optics 29 Aug 23 16:46 /shares/cms_optics/apps/seadas-7.5.3/opt/lib/libboost_filesystem.so -> libboost_filesystem.so.1.69.0
vs old
[optics0]$ ll /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/opt/lib/libboost_filesystem.so
lrwxrwxrwx 1 bmurch cms_optics 29 Jun 5 2018 /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/opt/lib/libboost_filesystem.so -> libboost_filesystem.so.1.60.0
Are not called directly by l2gen by their links (libboost_system.so && libboost_filesystem.so) so I don't know if it necessary (or dangerous) to unlink libboost_system.so && libboost_filesystem.so from the current 1.60.0 to create new links to the 1.69.0 versions?
Please let me know if there are different things linking to libboost_system.so && libboost_filesystem.so as I won't change the link in those cases. I'm pretty sure that others are linking to those, as they are not even in the old l2gen (but still in the opt/lib dir}
eg:
[optics0]$ ldd ./l2gen | grep libboost
[optics0]$
[bmurch@optics0 lib]$ ln -s libboost_filesystem.so.1.69.0 libboost_filesystem.so
[bmurch@optics0 lib]$ ln: creating symbolic link `libboost_filesystem.so': File exists
[bmurch@optics0 lib]$ ll libboost_system.so
lrwxrwxrwx 1 bmurch cms_optics 25 Jun 5 2018 libboost_system.so -> libboost_system.so.1.60.0
[bmurch@optics0 lib]$ ll libboost_system.so*
lrwxrwxrwx 1 bmurch cms_optics 25 Jun 5 2018 libboost_system.so -> libboost_system.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 17040 Jun 5 2018 libboost_system.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 8048 Aug 24 22:50 libboost_system.so.1.69.0
[bmurch@optics0 lib]$ ll libboost_filesystem.so*
lrwxrwxrwx 1 bmurch cms_optics 29 Jun 5 2018 libboost_filesystem.so -> libboost_filesystem.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 224560 Jun 5 2018 libboost_filesystem.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 250752 Aug 24 22:48 libboost_filesystem.so.1.69.0
Cheers
Brock
Serveral failures like this
Posted: Mon Aug 26, 2019 3:06 pm America/New_York
by oo_processing
Sean,
I now seeing this error (-E- clo_getOptionString: option=water_spectra_file needs to be set), please advise:
[optics0]$ /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/bin/l2gen_new_9.5.0-C2019.3 par=A20192381530.1KM.NAAMES.L2_LAC_OC.par
Input file /work/b/bmurch/tmp/S4P_MODIS_H5_MODISA.NAAMES.2019.238_version_0.08_HwTi_97B_copy/MYD021KM.2019238.1530.NAAMES.hdf is MODIS Aqua Level-1B HDF-EOS product.
Loading default parameters from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/common/msl12_defaults.par
Loading default parameters for MODISA from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/msl12_defaults.par
Loading default sub-sensor parameters for MODISA from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/aqua/msl12_defaults.par
Loading parameters for suite OC from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/msl12_defaults_OC.par
Loading command line parameters
Loading user parameters for MODISA
Loading characteristics for MODISA
Opening sensor information file /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/aqua/msl12_sensor_info.dat
Bnd Lam Fo Tau_r k_oz k_no2 t_co2 awhite aw bbw
0 412.000 172.912 3.099e-01 1.987e-03 5.814e-19 1.000e+00 1.000e+00 2.030e-02 2.884e-03
1 443.000 187.622 2.367e-01 3.189e-03 4.985e-19 1.000e+00 1.000e+00 1.110e-02 2.181e-03
2 469.000 205.878 1.914e-01 8.745e-03 3.938e-19 1.000e+00 1.000e+00 1.034e-02 1.749e-03
3 488.000 194.933 1.592e-01 2.032e-02 2.878e-19 1.000e+00 1.000e+00 1.676e-02 1.447e-03
4 531.000 185.747 1.126e-01 6.838e-02 1.525e-19 1.000e+00 1.000e+00 4.494e-02 1.014e-03
5 547.000 186.539 9.906e-02 8.622e-02 1.194e-19 1.000e+00 1.000e+00 5.491e-02 8.886e-04
6 555.000 183.869 9.432e-02 9.553e-02 9.445e-20 1.000e+00 1.000e+00 5.839e-02 8.443e-04
7 645.000 157.811 5.082e-02 7.382e-02 1.382e-20 1.000e+00 9.133e-01 3.458e-01 4.469e-04
8 667.000 152.255 4.443e-02 4.890e-02 7.065e-21 1.000e+00 8.921e-01 4.923e-01 3.900e-04
9 678.000 148.052 4.146e-02 3.787e-02 8.304e-21 1.000e+00 8.783e-01 5.116e-01 3.634e-04
10 748.000 128.065 2.849e-02 1.235e-02 2.157e-21 1.000e+00 7.832e-01 2.800e+00 2.470e-04
11 859.000 97.174 1.613e-02 2.347e-03 6.212e-23 1.000e+00 6.519e-01 4.396e+00 1.384e-04
12 869.000 95.824 1.540e-02 1.936e-03 7.872e-23 1.000e+00 6.403e-01 4.727e+00 1.320e-04
13 1240.000 45.467 3.617e-03 0.000e+00 0.000e+00 9.994e-01 0.000e+00 1.147e+02 3.021e-05
14 1640.000 23.977 1.219e-03 0.000e+00 0.000e+00 9.890e-01 0.000e+00 6.689e+02 1.000e-05
15 2130.000 9.885 4.286e-04 0.000e+00 0.000e+00 9.696e-01 0.000e+00 2.810e+03 3.465e-06
Bnd Lam
16 3750.000
17 3959.000
18 4050.000
19 6715.000
20 7325.000
21 8550.000
22 11000.000
23 12000.000
-E- clo_getOptionString: option=water_spectra_file needs to be set
Serveral failures like this
Posted: Mon Aug 26, 2019 8:43 pm America/New_York
by OB.DAACx - SeanBailey
Update the data files:
~/ocssw/share/common$ git diff ^HEAD~1 msl12_defaults.par
diff --git a/msl12_defaults.par b/msl12_defaults.par
index a019bf2..cbf0e4e 100644
--- a/msl12_defaults.par
+++ b/msl12_defaults.par
@@ -53,6 +53,9 @@ tauafile=$OCDATAROOT/common/taua865_climatology.hdf
# for brdf
fqfile=$OCDATAROOT/common/morel_fq.nc
+# for aw/bbw
+water_spectra_file=$OCDATAROOT/common/water_spectra.dat
+
# lon/lat subsampling
# -----------------------
ctl_pt_incr=1