Calculating geophysical products with Sentinel 2
Posted: Fri Jul 12, 2024 8:39 pm America/New_York
Hi! I want to calculate chlor_a from a Sentinel 2B image and I'm having trouble. Below is the error I'm getting - l2gen doesn't recognize the manifest.safe file that Sentinel produces. I have tried many different assortments of installing the --msis2b processes with different versions. I can't figure out what to do to get l2gen to work. Just trying to get a rough Chl and SST plot from Sentinel for a project (Sentinel has the only high-resolution matchup on the day we sampled). I also pasted the result of seadas_info below. Thanks!
Code: Select all
lukecarberry$ l2gen par=/Users/lukecarberry/Documents/6_Nick_Project/Projects/Finesst_Subm/landsat/LS_params_noifile_local2 ifile=/Users/lukecarberry/Documents/6_Nick_Project/Projects/Glider/3Processed/Satellite/210918/S2B_MSIL2A_20210918T183929_N0500_R070_T10SGD_20230114T002842.SAFE/manifest.safe ofile=/Users/lukecarberry/Documents/6_Nick_Project/Projects/Glider/3Processed/Satellite/210918/S2B_MSIL2A_20210918T183929_N0500_R070_T10SGD_20230114T002842.SAFE/S2B_MSI.20210918T183929.L2.OC.nc
Loading default parameters from /Users/lukecarberry/SeaDAS/ocssw/share/common/msl12_defaults.par
-E- /Users/dshea/ocssw/oel_hdf4/libl1/l1_options.c Line 212: Could not find type for file /Users/lukecarberry/Documents/6_Nick_Project/Projects/Glider/3Processed/Satellite/210918/S2B_MSIL2A_20210918T183929_N0500_R070_T10SGD_20230114T002842.SAFE/manifest.safe.Code: Select all
NASA Science Processing (OCSSW):
OCSSWROOT=/Users/lukecarberry/SeaDAS/ocssw
OCDATAROOT=/Users/lukecarberry/SeaDAS/ocssw/share
l2gen version: msl12 9.7.0-V2024.0 (Jun 26 2024 12:31:54)
l2bin version: 7.0.7
l3bin version: 5.14
l3mapgen version: l3mapgen 2.4.0-V2024.0 (Jun 26 2024 12:30:39)
Installed Missions: ['aquarius', 'aqua', 'terra', 'msis2a', 'msis2b', 'olcis3a', 'olcis3b', 'olil8', 'olil9', 'seawifs']
General System and Software:
Operating system: MacOS 14.1.2
Java version:
Python3 version: 3.10.9
Python3 Path: /opt/homebrew/anaconda3/bin/python3
Env:
CC=gcc
CXX=g++
ELEMENTS=/Users/lukecarberry/SeaDAS/ocssw/var/seawifs
EOS_LIB_PREFIX=macarm64
FC=gfortran
GCC_TUNE=
HDFEOS_LIB=/Users/lukecarberry/SeaDAS/ocssw/opt/EOS/lib/macarm64
HRPT_STATION_IDENTIFICATION_FILE=/Users/lukecarberry/SeaDAS/ocssw/share/seawifs/station/station_id.dat
L2GEN_ANC=/Users/lukecarberry/SeaDAS/ocssw/var/anc
LIB3_BIN=/Users/lukecarberry/SeaDAS/ocssw/opt/bin
LIB3_CHECK=0
LIB3_DIR=/Users/lukecarberry/SeaDAS/ocssw/opt
LIB3_INC=/Users/lukecarberry/SeaDAS/ocssw/opt/include
LIB3_LIB=/Users/lukecarberry/SeaDAS/ocssw/opt/lib
NAVCTL=/Users/lukecarberry/SeaDAS/ocssw/share/seawifs/nav
NAVQC=/Users/lukecarberry/SeaDAS/ocssw/share/seawifs/nav
OCSSW_ARCH=macosx_arm64
OCSSW_BIN=/Users/lukecarberry/SeaDAS/ocssw/bin
OCSSW_DEBUG=0
OCSSW_MODIS=1
OCTS_REGISTRATION_TABLES=/Users/lukecarberry/SeaDAS/ocssw/share/octs/nav
OCVARROOT=/Users/lukecarberry/SeaDAS/ocssw/var
ORBCTL=/Users/lukecarberry/SeaDAS/ocssw/share/seawifs/nav
PGSINC=/Users/lukecarberry/SeaDAS/ocssw/opt/EOS/include
PGSLIB=/Users/lukecarberry/SeaDAS/ocssw/opt/EOS/lib/macarm64
PROJ_DATA=/Users/lukecarberry/SeaDAS/ocssw/opt/share/proj
PROJ_LIB=/Users/lukecarberry/SeaDAS/ocssw/opt/share/proj
SWFTBL=/Users/lukecarberry/SeaDAS/ocssw/share/seawifs/qc
SWTBL=/Users/lukecarberry/SeaDAS/ocssw/share/seawifs