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l2gen landsat new version

https://forum.earthdata.nasa.gov/viewtopic.php?t=5750

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l2gen landsat new version

Posted: Tue Jul 23, 2024 9:34 am America/New_York
by rinokeros
When i run l2gen through command line i have these errors: l2gen ifile=/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_MTL.txt ofile=/oc10/data/TEST_alexandra/SI2/SI2A/outdir/20230117/L2023011720230131.L2_L8.nc l2prod=Rrs_443,Rrs_482,Rrs_561,aot_865,angstrom,chlor_a,Kd_490,l2_flags
Loading default parameters from /oc01/software/seadas-V2023.3/ocssw/share/common/msl12_defaults.par
Input file /oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_MTL.txt is a Landsat 8/9 OLI L1B GEOTIFF file.

Loading characteristics for OLIL8
Opening sensor information file /oc01/software/seadas-V2023.3/ocssw/share/oli/msl12_sensor_info.dat
Bnd Lam Fo Tau_r k_oz k_no2 t_co2 awhite aw bbw
0 443.000 189.652 2.352e-01 2.929e-03 5.024e-19 1.000e+00 1.000e+00 7.170e-03 2.169e-03
1 482.000 200.396 1.685e-01 1.957e-02 3.213e-19 1.000e+00 1.000e+00 1.581e-02 1.529e-03
2 561.000 182.079 9.020e-02 1.038e-01 8.351e-20 1.000e+00 1.000e+00 6.998e-02 8.054e-04
3 655.000 155.038 4.793e-02 6.200e-02 1.177e-20 1.000e+00 1.000e+00 3.751e-01 4.215e-04
4 865.000 95.063 1.551e-02 2.223e-03 3.306e-23 1.000e+00 1.000e+00 4.630e+00 1.332e-04
5 1609.000 24.755 1.284e-03 0.000e+00 0.000e+00 1.000e+00 1.000e+00 7.607e+02 1.052e-05
6 2201.000 8.546 3.697e-04 0.000e+00 0.000e+00 1.000e+00 1.000e+00 2.250e+03 2.958e-06


Loading default parameters for OLIL8 from /oc01/software/seadas-V2023.3/ocssw/share/oli/msl12_defaults.par
Loading default sub-sensor parameters for OLIL8 from /oc01/software/seadas-V2023.3/ocssw/share/oli/l8/msl12_defaults.par
Loading parameters for suite OC from /oc01/software/seadas-V2023.3/ocssw/share/oli/msl12_defaults_OC.par
Loading command line parameters

Loading user parameters for OLIL8

Internal data compression requested at compression level: 4
Reading Thuillier_F0.dat
OLI Level-1B /oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_MTL.txt
OLI Level-1B Collection 2
OLI Level-1B Band[0]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B6.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[6]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Angle File:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_ANG.txt
OLI Level-1B Band[0]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B6.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[6]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/oc10/data/TEST_alexandra/SI2/SI2A/workdirtest/20230117/LC08_L1TP_194056_20230117_20230131_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Start Time: 2023-01-17 017 10:22:9.076764
OLI file has 7 bands, 7581 samples, 7731 lines
Allocated 6451459 bytes in L1 record.
Allocated 2274300 bytes in L2 record.

Opening: /oc10/data/TEST_alexandra/SI2/SI2A/outdir/20230117/L2023011720230131.L2_L8.nc


The following products will be included in /oc10/data/TEST_alexandra/SI2/SI2A/outdir/20230117/L2023011720230131.L2_L8.nc.
0 Rrs_443
1 Rrs_482
2 Rrs_561
3 aot_865
4 angstrom
5 chlor_a
6 Kd_490
7 l2_flags



Begin l2gen Version 9.6.0-V2023.3 Processing
Sensor is OLIL8
Sensor ID is 15
Sensor has 7 reflective bands
Sensor has 0 emissive bands
Number of along-track detectors per band is 1
Number of input pixels per scan is 7581
Processing pixels 1 to 7581 by 1
Processing scans 1 to 7731 by 1
Ocean processing enabled
Land processing enabled
Atmospheric correction enabled

Begin MSl12 processing at 2024205153331000

Allocated 6451459 bytes in L1 record.
Allocated 6451459 bytes in L1 record.
Allocated 6451459 bytes in L1 record.
Segmentation fault (core dumped)

What do you recomend?

Re: l2gen landsat new version

Posted: Tue Aug 20, 2024 6:49 pm America/New_York
by bssackma_gsi
I am having the same issue with a segmentation fault when trying to process a Landsat 8 L1 file with both OCSSW V2024.1 and V2024.2.

I am also not 100% sure that I am retrieving ancillary data when I select 'Get Ancillary' from the l2gen GUI. When I select 'Get Ancillary' a dialog box flashes past the screen, but nothing else seems to happen and the dialog quickly vanishes. I have looked for ancillary data where I expected to find it (i.e., ~/SeaDAS/ocssw/var/anc/YYYY/DDD) but the anc/ directory doesn't exist. I have opened ancillary_data.db and can see the paths noted for the ancillary data...but again, they never showed up (see attachments)? Could this be part of the segmentation fault issue?

Any suggestions for a fix/work around would be VERY much appreciated. I have attached a copy of the error and details on my specific install/configuration (it was a fresh install completed a few weeks ago). Please let me know if I can provide any additional info that might be helpful.

Thanks,
Brandon

execution exception: java.io.IOException: l2gen failed with exit code 139.
Check log for more details.
Loading default parameters from /home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/common/msl12_defaults.par
Input file /home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_MTL.txt is a Landsat 8/9 OLI L1B GEOTIFF file.

Loading characteristics for OLIL8
Opening sensor information file /home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/oli/msl12_sensor_info.dat
Bnd Lam Fo Tau_r k_oz k_no2 t_co2 awhite aw bbw
0 443.000 189.652 2.352e-01 2.929e-03 5.024e-19 1.000e+00 1.000e+00 7.170e-03 2.169e-03
1 482.000 200.396 1.685e-01 1.957e-02 3.213e-19 1.000e+00 1.000e+00 1.581e-02 1.529e-03
2 561.000 182.079 9.020e-02 1.038e-01 8.351e-20 1.000e+00 1.000e+00 6.998e-02 8.054e-04
3 655.000 155.038 4.793e-02 6.200e-02 1.177e-20 1.000e+00 1.000e+00 3.751e-01 4.215e-04
4 865.000 95.063 1.551e-02 2.223e-03 3.306e-23 1.000e+00 1.000e+00 4.630e+00 1.332e-04
5 1609.000 24.755 1.284e-03 0.000e+00 0.000e+00 1.000e+00 1.000e+00 7.607e+02 1.052e-05
6 2201.000 8.546 3.697e-04 0.000e+00 0.000e+00 1.000e+00 1.000e+00 2.250e+03 2.958e-06


Loading default parameters for OLIL8 from /home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/oli/msl12_defaults.par
Loading default sub-sensor parameters for OLIL8 from /home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/oli/l8/msl12_defaults.par
Loading parameters for suite OC from /home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/oli/msl12_defaults_OC.par
Loading command line parameters

Loading user parameters for OLIL8

Internal data compression requested at compression level: 4
Reading Thuillier_F0.dat
OLI Level-1B /home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_MTL.txt
OLI Level-1B Collection 2
OLI Level-1B Band[0]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B1.TIF
OLI Level-1B Band[1]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B2.TIF
OLI Level-1B Band[2]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B3.TIF
OLI Level-1B Band[3]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B4.TIF
OLI Level-1B Band[4]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[6]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Angle File:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_ANG.txt
OLI Level-1B Band[0]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B6.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[6]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LC08_L1TP_047027_20151121_20200908_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Start Time: 2015-11-21 325 19:01:58.744973
OLI file has 7 bands, 7871 samples, 7971 lines
Allocated 6698249 bytes in L1 record.
Allocated 2361300 bytes in L2 record.

Opening: /home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LANDSAT8_OLI.20151121T190158.L2.OC.nc


The following products will be included in /home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing/LANDSAT8_OLI.20151121T190158.L2.OC.nc.
0 aot_865
1 angstrom
2 Rrs_443
3 Rrs_482
4 Rrs_561
5 Rrs_655
6 chlor_a
7 Kd_490
8 l2_flags



Begin l2gen Version 9.7.0-V2024.2 Processing
Sensor is OLIL8
Sensor ID is 15
Sensor has 7 reflective bands
Sensor has 0 emissive bands
Number of along-track detectors per band is 1
Number of input pixels per scan is 7871
Processing pixels 1 to 7871 by 1
Processing scans 1 to 7971 by 1
Ocean processing enabled
Land processing enabled
Atmospheric correction enabled

Begin MSl12 processing at 2024233161045000

Allocated 6698249 bytes in L1 record.
Allocated 6698249 bytes in L1 record.
Allocated 6698249 bytes in L1 record.
/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/bin/ocssw_runner: line 23: 1193280 Segmentation fault (core dumped) $*

==========

-----------------------------------------------------------
Main Application Platform:
-----------------------------------------------------------
Application Version: SeaDAS 9.0.1
SNAP Engine Version: 11.0.0.0* (SeaDAS Platform modified)
SNAP Desktop Version: 11.0.0.0* (SeaDAS Platform modified)
SNAP Engine Build Date: 202405131445
SNAP Desktop Build Date: 202405131450
Installation Directory: /home/bssackmann@gsi-pc.local/SeaDAS
Data Directory: /home/bssackmann@gsi-pc.local/.seadas9
Configuration: /home/bssackmann@gsi-pc.local/SeaDAS/etc/snap.properties
VM Configuration: /home/bssackmann@gsi-pc.local/SeaDAS/etc/seadas.conf
VM Configuration: /home/bssackmann@gsi-pc.local/SeaDAS/etc/snap.conf
VM Configuration (gpt): /home/bssackmann@gsi-pc.local/SeaDAS/bin/gpt.vmoptions
VM Configuration (pconvert): /home/bssackmann@gsi-pc.local/SeaDAS/bin/pconvert.vmoptions
Runtime Configuration: /home/bssackmann@gsi-pc.local/.seadas9/etc/snap.properties
Runtime Configuration (SeaDAS Toolbox): /home/bssackmann@gsi-pc.local/.seadas9/etc/seadas.properties
JRE: OpenJDK Runtime Environment 11.0.19+7
JVM: OpenJDK 64-Bit Server VM by Eclipse Adoptium
Memory: 4096 MiB
OCSSWROOT (Java Env): null
Python3 Directory: /usr/bin/python3


-----------------------------------------------------------
SeaDAS Toolbox:
-----------------------------------------------------------
SeaDAS Toolbox Version: 2.0.0
SeaDAS Toolbox Build Date: 202405131459
Configuration: /home/bssackmann@gsi-pc.local/.seadas9/etc/seadas.properties
OCSSW Root Directory: /home/bssackmann@gsi-pc.local/SeaDAS/ocssw
OCSSW Docker Log Directory: /home/bssackmann@gsi-pc.local/SeaDAS/bin
OCSSW Location: local
Environment {$OCSSWROOT} (external): null


-----------------------------------------------------------
NASA Science Processing (OCSSW):
-----------------------------------------------------------
OCSSWROOT=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw
OCDATAROOT=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share
l2gen version: msl12 9.7.0-V2024.2 (Aug 8 2024 21:32:06)
l2bin version: 7.0.7
l3bin version: 5.14
l3mapgen version: l3mapgen 2.4.0-V2024.2 (Aug 8 2024 21:31:36)
Installed Missions: ['olil8']


-----------------------------------------------------------
General System and Software:
-----------------------------------------------------------
Operating system: Ubuntu 22.04.4 LTS
Java version: 11.0.23
Python3 version: 3.10.12
Python3 Path: /usr/bin/python3
Env:
CC=gcc
CXX=g++
ELEMENTS=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/var/seawifs
EOS_LIB_PREFIX=linux64
FC=gfortran
GCC_TUNE=
HDFEOS_LIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/EOS/lib/linux64
HRPT_STATION_IDENTIFICATION_FILE=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/station/station_id.dat
L2GEN_ANC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/var/anc
LIB3_BIN=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/bin
LIB3_CHECK=0
LIB3_DIR=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt
LIB3_INC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/include
LIB3_LIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/lib
NAVCTL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/nav
NAVQC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/nav
OCSSW_ARCH=linux_64
OCSSW_BIN=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/bin
OCSSW_DEBUG=0
OCSSW_MODIS=1
OCTS_REGISTRATION_TABLES=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/octs/nav
OCVARROOT=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/var
ORBCTL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/nav
PGSINC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/EOS/include
PGSLIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/EOS/lib/linux64
PROJ_DATA=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/share/proj
PROJ_LIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/share/proj
SWFTBL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/qc
SWTBL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs

Re: l2gen landsat new version

Posted: Wed Aug 21, 2024 4:32 pm America/New_York
by bssackma_gsi
I believe I resolved my issues related to setting the $OCSSWROOT variable and proper downloading of ancillary data. I can now retrieve ancillary from both the command line and GUI (updated config info below). However, my issues related to the segmentation fault persist - both from the GUI and command line. Is there any way to request more verbose output from l2gen so that I can see whats happening before the fault occurs? Any suggestions on how to proceed from here would be appreciated.

Thanks,
Brandon

-----------------------------------------------------------
Main Application Platform:
-----------------------------------------------------------
Application Version: SeaDAS 9.0.1
SNAP Engine Version: 11.0.0.0* (SeaDAS Platform modified)
SNAP Desktop Version: 11.0.0.0* (SeaDAS Platform modified)
SNAP Engine Build Date: 202405131445
SNAP Desktop Build Date: 202405131450
Installation Directory: /home/bssackmann@gsi-pc.local/SeaDAS
Data Directory: /home/bssackmann@gsi-pc.local/.seadas9
Configuration: /home/bssackmann@gsi-pc.local/SeaDAS/etc/snap.properties
VM Configuration: /home/bssackmann@gsi-pc.local/SeaDAS/etc/seadas.conf
VM Configuration: /home/bssackmann@gsi-pc.local/SeaDAS/etc/snap.conf
VM Configuration (gpt): /home/bssackmann@gsi-pc.local/SeaDAS/bin/gpt.vmoptions
VM Configuration (pconvert): /home/bssackmann@gsi-pc.local/SeaDAS/bin/pconvert.vmoptions
Runtime Configuration: /home/bssackmann@gsi-pc.local/.seadas9/etc/snap.properties
Runtime Configuration (SeaDAS Toolbox): /home/bssackmann@gsi-pc.local/.seadas9/etc/seadas.properties
JRE: OpenJDK Runtime Environment 11.0.19+7
JVM: OpenJDK 64-Bit Server VM by Eclipse Adoptium
Memory: 4096 MiB
OCSSWROOT (Java Env): /home/bssackmann@gsi-pc.local/SeaDAS/ocssw
Python3 Directory: /usr/bin/python3


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SeaDAS Toolbox:
-----------------------------------------------------------
SeaDAS Toolbox Version: 2.0.0
SeaDAS Toolbox Build Date: 202405131459
Configuration: /home/bssackmann@gsi-pc.local/.seadas9/etc/seadas.properties
OCSSW Root Directory: /home/bssackmann@gsi-pc.local/SeaDAS/ocssw
OCSSW Docker Log Directory: /home/bssackmann@gsi-pc.local/10188_WA_Eco_Landsat_Data_Processing/data/Puget_Sound_Test_001/_testing
OCSSW Location: local
Environment {$OCSSWROOT} (external): /home/bssackmann@gsi-pc.local/SeaDAS/ocssw


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NASA Science Processing (OCSSW):
-----------------------------------------------------------
OCSSWROOT=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw
OCDATAROOT=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share
l2gen version: msl12 9.7.0-V2024.2 (Aug 8 2024 21:32:06)
l2bin version: 7.0.7
l3bin version: 5.14
l3mapgen version: l3mapgen 2.4.0-V2024.2 (Aug 8 2024 21:31:36)
Installed Missions: ['olil8']


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General System and Software:
-----------------------------------------------------------
Operating system: Ubuntu 22.04.4 LTS
Java version: 11.0.23
Python3 version: 3.10.12
Python3 Path: /usr/bin/python3
Env:
CC=gcc
CXX=g++
ELEMENTS=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/var/seawifs
EOS_LIB_PREFIX=linux64
FC=gfortran
GCC_TUNE=
HDFEOS_LIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/EOS/lib/linux64
HRPT_STATION_IDENTIFICATION_FILE=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/station/station_id.dat
L2GEN_ANC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/var/anc
LIB3_BIN=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/bin
LIB3_CHECK=0
LIB3_DIR=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt
LIB3_INC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/include
LIB3_LIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/lib
NAVCTL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/nav
NAVQC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/nav
OCSSW_ARCH=linux_64
OCSSW_BIN=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/bin
OCSSW_DEBUG=0
OCSSW_MODIS=1
OCTS_REGISTRATION_TABLES=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/octs/nav
OCVARROOT=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/var
ORBCTL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/nav
PGSINC=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/EOS/include
PGSLIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/EOS/lib/linux64
PROJ_DATA=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/share/proj
PROJ_LIB=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/opt/share/proj
SWFTBL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs/qc
SWTBL=/home/bssackmann@gsi-pc.local/SeaDAS/ocssw/share/seawifs

Re: l2gen landsat new version

Posted: Wed Aug 21, 2024 6:20 pm America/New_York
by bssackma_gsi
From a suggestion on another thread I have reverted back to tag 2022.3 which seems to work.
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