Content deleted Content added
m →Visualizing molecular dynamics trajectories: no point in defining this |
m Disambiguating links to Blast (link changed to BLAST (biotechnology)) using DisamAssist. |
||
| (5 intermediate revisions by 3 users not shown) | |||
Line 4:
| caption = Sirius running with structure browser and sequence viewer open, displaying hemoglobin (PDB id 102m).
| developer = San Diego Supercomputer Center
| discontinued = yes
| latest release version = 1.2
| latest release date = {{Start date and age|2008|11|18}}
Line 9 ⟶ 10:
| genre = [[Molecular modelling]]
| license = [[Proprietary software|Proprietary]] [[freeware]] for academic, non-profit
| website = {{URL|https://web.archive.org/web/20110406034756/http://sirius.sdsc.edu/}}
}}
'''Sirius''' is a [[molecular modelling]] and analysis system developed at [[San Diego Supercomputer Center]]. Sirius is designed to support advanced user requirements that go beyond simple display of small [[molecule]]s and [[protein]]s. Sirius supports high quality interactive [[3D graphics]], structure building, displaying [[protein]] or [[DNA]] [[primary sequence]]s, access to remote data sources, and visualizing [[molecular dynamics]] trajectories. It can be used for [[scientific visualization]] and analysis, and [[chemistry]] and [[biology]] instruction.
This software is no longer supported as of 2011.
== Key features ==
Line 21 ⟶ 24:
* Command line interpreter and scripting support fully compatible with extant [[RasMol]] scripts
* Full support for [[molecular dynamics]] trajectory visualizing
* [[BLAST (biotechnology)|BLAST]] search directly in [[Protein Data Bank]] and [[Uniprot]] databases
* Ability to move parts of the loaded data while freezing the rest
* Interactive calculation of [[hydrogen bond]]ing, steric clashes, [[Ramachandran plot]]s
Line 28 ⟶ 31:
* Integrated selection and coloring across individual visualizing components
Sirius is based on molecular graphics code and data structures developed as a part of the Molecular Biology Toolkit.<ref>[http://mbt.sdsc.edu Molecular Biology Toolkit] {{webarchive|url=https://archive.
== RasMol-compatible scripting ==
Line 59 ⟶ 62:
== External links ==
* [https://web.archive.org/web/20110406034756/http://sirius.sdsc.edu/ Internet Archive of Official Website]
▲* [https://archive.is/20121214224327/http://mbt.sdsc.edu/ Molecular Biology Toolkit]
* [http://www.sdsc.edu San Diego Supercomputer Center]
* [http://www.ucsd.edu University of California San Diego]
| |||