Sirius visualization software: Difference between revisions

Browse history interactively

← Previous edit

Content deleted Content added

VisualWikitext

Revision as of 21:26, 4 December 2021 edit Rlink2 (talk \| contribs) Extended confirmed users 309,868 edits m archive link repair, may include: archive.* -> archive.today, and http->https for ghostarchive.org and archive.org (wp:el#Specifying_protocols) Tag: AWB ← Previous edit		Latest revision as of 21:01, 11 December 2023 edit undo Rodw (talk \| contribs) Autopatrolled, Event coordinators, Extended confirmed users, New page reviewers, Pending changes reviewers, Rollbackers 840,827 edits m Disambiguating links to Blast (link changed to BLAST (biotechnology)) using DisamAssist.
(4 intermediate revisions by 2 users not shown)
Line 4: \| caption = Sirius running with structure browser and sequence viewer open, displaying hemoglobin (PDB id 102m). \| developer = San Diego Supercomputer Center \| discontinued = yes \| latest release version = 1.2 \| latest release date = {{Start date and age\|2008\|11\|18}} Line 9 ⟶ 10: \| genre = [[Molecular modelling]] \| license = [[Proprietary software\|Proprietary]] [[freeware]] for academic, non-profit \| website = {{URL\|https://web.archive.org/web/20110406034756/http://sirius.sdsc.edu/}} }} '''Sirius''' is a [[molecular modelling]] and analysis system developed at [[San Diego Supercomputer Center]]. Sirius is designed to support advanced user requirements that go beyond simple display of small [[molecule]]s and [[protein]]s. Sirius supports high quality interactive [[3D graphics]], structure building, displaying [[protein]] or [[DNA]] [[primary sequence]]s, access to remote data sources, and visualizing [[molecular dynamics]] trajectories. It can be used for [[scientific visualization]] and analysis, and [[chemistry]] and [[biology]] instruction. This software is no longer supported as of 2011. == Key features == Line 21 ⟶ 24: * Command line interpreter and scripting support fully compatible with extant [[RasMol]] scripts * Full support for [[molecular dynamics]] trajectory visualizing * [[BLAST (biotechnology)\|BLAST]] search directly in [[Protein Data Bank]] and [[Uniprot]] databases * Ability to move parts of the loaded data while freezing the rest * Interactive calculation of [[hydrogen bond]]ing, steric clashes, [[Ramachandran plot]]s Line 59 ⟶ 62: == External links == * [https://web.archive.org/web/20110406034756/http://sirius.sdsc.edu/ Internet Archive of Official Website] * {{Official website\|sirius.sdsc.edu}} * [http://sirius.sdsc.edu/tutorial/tutorials.html Sirius tutorials] * [https://archive.today/20121214224327/http://mbt.sdsc.edu/ Molecular Biology Toolkit] * [http://www.sdsc.edu San Diego Supercomputer Center]