ModBase: Difference between revisions

Revision as of 21:39, 12 April 2011

Latest revision as of 01:11, 12 February 2025

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{{infobox biodatabase

{{Orphan|date=April 2011}}

{{infobox_biodatabase

|title = ModBase

|logo =[[File:Database.png]]

|description = Database of comparative protein structure models

|scope =

|organism =

|center =[[University of California at San Francisco]]

|laboratory = Department of Bioengineering and Therapeutic Sciences

|author = Ursula Pieper, Eswar Narayanan, Ben Webb, Andrej Sali

|pmidcitation = Pieper & al. (2011)<ref name="pmid21097780"/>

|released = 20101998

|standard =

|format =

|url = http://salilab.org/modbase

|download = ftp://salilab.org/databases/modbase

|webservice = http://salilab.org/modweb

|sql =

|sparql =

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|bookmark =

|version=

}}'''ModBase''' is a database of annotated [[Homology modeling|comparative protein structure]] models, containing models for more than 3.8 million unique protein sequences.<ref name="pmid21097780">{{cite journal | quotes = yes|last=Pieper|first=Ursula |authorlink=|coauthorsauthor2=Webb Benjamin M, |author3=Barkan David T, |author4=Schneidman-Duhovny Dina, |author5=Schlessinger Avner, |author6=Braberg Hannes, |author7=Yang Zheng, |author8=Meng Elaine C, |author9=Pettersen Eric F, |author10=Huang Conrad C, |author11=Datta Ruchira S, |author12=Sampathkumar Parthasarathy, |author13=Madhusudhan Mallur S, |author14=Sjölander Kimmen, |author15=Ferrin Thomas E, |author16=Burley Stephen K, |author17=Sali Andrej |year=2011|monthdate=Jan 2011|title=ModBase, a database of annotated comparative protein structure models, and associated resources|journal = Nucleic Acids Res.|volume=39|issue=Database issue|pages=D465-74|publisher= |___location = England| issn = | pmid = 21097780|doi = 10.1093/nar/gkq1091| bibcode = | oclc =| id = | url = | pmc =3013688 |language}}</ref> =Models eng|are formatcreated =by |the accessdate[[comparative =modeling]] |pipeline laysummaryModPipe =which |relies laysourceon =the |[[MODELLER]] laydateprogram. = | quote = }}</ref>

ModBase is developed in the laboratory of [[Andrej Sali]] at [[UCSF]]. ModBase models are also accessible through the Protein Model Portal.

==References==

<references/>

==See also==

* [[Homology modeling]]

==References==

<references/>

==External links==

* http://salilab.org/modbase

[[Category:BiologicalProtein databases]]

{{Biodatabase-stub}}

[[Category:Biological databases]]

[[Category:Protein methods]]

[[Category:Protein structure]]

{{Biodatabase-stub}}