Talk:Multiple sequence alignment: Difference between revisions

Revision as of 12:45, 11 March 2009

Latest revision as of 03:02, 5 April 2025

(13 intermediate revisions by 10 users not shown)

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{{ArticleHistory

|action1=GAN

|action1date=04:03, 12 September 20062012

|action1result=listed

|action1oldid=75224080

|currentstatus=GA

|topic=Natsci

}}

{{Wikiproject MCB|class=GA|importance=mid}}

== Good article nomination ==

|action2=GAR

My suggestions:

|action2date=18:51, 7 March 2010 (UTC)

* <s>in section Dynamic programming and computational complexity + Progressive alignment construction (after finishing the article, I must say in nearly all sections), there are several external links that should be converted into internal references</s>

|action2link=Talk:Multiple sequence alignment/GA1

* <s>Maybe not so important, but a reference for that statement: "PRRP performs best when refining an alignment previously constructed by a faster method." would be useful</s>

|action2result=kept

* <s>"which is also available as a web portal": this kind of sentences should be all converted into reference. It looks bad in the article.</s>

|action2oldid=348064247

* <s>What about external links section? I now the article is full of external links (see above), but there must be some links writing about MSA.</s>

Anyway, absolutely great article, I'm not an expert in that topic, but I could easily read it. Congrat! [[User:NCurse|NCurse]] _{[[User talk:NCurse|work]]} 07:03, 10 September 2006 (UTC)

: Thanks. I'm glad it's readable by a knowledgeable non-expert; bioinformatics can be very difficult to explain well. I agree that not all the external links are written/segued into very well, but integrating them into the text was a (semi-)conscious decision also followed in the parent [[sequence alignment]] and the (siblings, I guess?) [[structural alignment]] and [[computational phylogenetics]]. I figure that many readers are probably looking for a way to actually perform a sequence alignment, and if they find a method they like, it's much easier to have the external link in the relevant paragraph than at the bottom of the article. Tracking down the current download page/web portal from the original paper can also be a challenge, since these things change hosting/get absorbed by larger projects/follow a postdoc when he sets up his own lab/etc. On rereading I do notice a couple of programs that have an external link but no literature reference, so I'll clean that up.

|topic=Natsci

: The PRPP statement belongs to ref #9, which appears in the immediately preceding sentence as well. I added a second note - do you think that looks redundant? I'll look for useful links tomorrow - there's lots of them but the signal-to-noise ratio is not so great. [[User:Opabinia regalis|Opabinia regalis]] 07:57, 10 September 2006 (UTC)

|action3 = GAR

:: FYI, I added external links and references to the tools that were paperless, and cleaned up some of the web portal links. I did leave the direct external links to the relevant tools, but hopefully a bit more integrated. What do you think? [[User:Opabinia regalis|Opabinia regalis]] 23:37, 10 September 2006 (UTC)

|action3date = 16:58, 11 April 2024 (UTC)

|action3link = Wikipedia:Good article reassessment/Multiple sequence alignment/1

Some things left:

|action3result = delisted

* <s>"A web portal and download site is available at MUSCLE."

|action3oldid = 1217842964

* "A database-search technique based on HMM methods is available in the program HMMer.[14]"

|currentstatus =GA DGA

* "A server for locating motifs in unaligned sequences is located at BLOCKS.".....etc

}}

I think the external links (not internal references) can stay in the article, but they should be merged into the paragraphs, because now these are lonely statements.</s> Anyway everything seems to be good to me. [[User:NCurse|NCurse]] _{[[User talk:NCurse|work]]} 13:12, 11 September 2006 (UTC)

{{WikiProject banner shell|class=B|1=

: I think I got them all, thanks. [[User:Opabinia regalis|Opabinia regalis]] 04:06, 12 September 2006 (UTC)

{{WikiProject Molecular Biology|importance=High|genetics=yes|genetics-importance=mid|MCB=yes|MCB-importance=mid|COMPBIO=yes|COMPBIO-importance=high

}}

}}

Great work, thanks for the reactions. Congrat! :) It's now a [[WP:GA|good article]]. [[User:NCurse|NCurse]] _{[[User talk:NCurse|work]]} 14:47, 12 September 2006 (UTC)

: Thanks for the review! [[User:Opabinia regalis|Opabinia regalis]] 01:03, 13 September 2006 (UTC)

==some clarifications==

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First wikipedia post ever here - not quite ready to be bold yet! - so wanted to ask/check whether anyone disagrees with introducing some changes to reflect this distinction to the MSA page?

[[User:SiggyDood|SiggyDood]] ([[User talk:SiggyDood|talk]]) 12:45, 11 March 2009 (UTC)

{{/GA1}}

== External links modified (February 2018) ==

Hello fellow Wikipedians,

I have just modified 4 external links on [[Multiple sequence alignment]]. Please take a moment to review [[special:diff/824573909|my edit]]. If you have any questions, or need the bot to ignore the links, or the page altogether, please visit [[User:Cyberpower678/FaQs#InternetArchiveBot|this simple FaQ]] for additional information. I made the following changes:

*Added archive https://web.archive.org/web/20100311140200/http://www.ebi.ac.uk/help/matrix.html to http://www.ebi.ac.uk/help/matrix.html

*Added archive https://web.archive.org/web/20060705082556/http://align.genome.jp/ to http://align.genome.jp/

*Added archive https://web.archive.org/web/20060909003117/http://pbil.univ-lyon1.fr/alignment.html to http://pbil.univ-lyon1.fr/alignment.html

*Added archive https://web.archive.org/web/20090821192233/http://bioinf.may.ie/school02/notes.html to http://bioinf.may.ie/school02/notes.html

When you have finished reviewing my changes, you may follow the instructions on the template below to fix any issues with the URLs.

{{sourcecheck|checked=false|needhelp=}}

Cheers.—[[User:InternetArchiveBot|'''<span style="color:darkgrey;font-family:monospace">InternetArchiveBot</span>''']] <span style="color:green;font-family:Rockwell">([[User talk:InternetArchiveBot|Report bug]])</span> 04:37, 8 February 2018 (UTC)

==GA Reassessment==

{{Wikipedia:Good article reassessment/Multiple sequence alignment/1}}