List of alignment visualization software: Difference between revisions

Revision as of 15:18, 8 January 2023

Latest revision as of 14:09, 29 May 2025

(3 intermediate revisions by 3 users not shown)

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| {{Official website|www.red-bean.com/ale}}

|-

| AliView 20212025

| {{no}}

| {{yes|MUSCLE integrated; other programs such as MAFFT can be defined}}

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|Command line

| {{Official website|www.clustal.org}}

|?-

| [[CodonCode Aligner]]

| {{no | no, but can read, add & show structure annotations}}

| {{yes|[[Clustal]], MUSCLE, various built-in algorithms}}

| {{yes| Yes}}

| Multi- and pairwise alignments, assembly, sequence translation, editing, trimming, mutation detection, restriction analysis, cloning, primer design, dotplot, much more

| ABI, SCF, [[FASTA format|FASTA]], FASTQ, [[Nexus file|Nexus]]/PAUP or [[PHYLIP]], Sam, Bam, .dna, EMBL, GenBank, BLAST, GFF

| {{proprietary}}, [[Commercial software|commercial]], Viewer is [[Freeware]]

|No

|Mac OS, Windows

| {{Official website|www.codoncode.com/aligner}}

|-

| Cylindrical Alignment App

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| Dot-plot, [[vim (text editor)|vim]]-like editing keys

| [[Nexus file|Nexus]], MSF, [[Clustal]], [[FASTA format|FASTA]], [[PHYLIP]], [[MASE format|MASE]]

| {{proprietaryfree}}, [[freewareGNU General Public License|GPL]] 3

|?

|?

| Linux, Mac OS, Windows

| {{Official website|pbil.univ-lyon1.fr/software/seaview.html}}

|-

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{{DEFAULTSORT:Alignment visualization software}}

[[Category:Lists of bioinformatics software]]

[[Category:Visualization (graphics)software|Software]]