Cell-based models: Difference between revisions

Revision as of 20:10, 30 March 2024

Latest revision as of 03:56, 9 June 2025

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Line 48:

|2D

|<ref>{{cite journal | vauthors = Nestor-Bergmann A, Blanchard GB, Hervieux N, Fletcher AG, Étienne J, Sanson B | title = ACAM - Apposed Cortex Adhesion Model | year = 2021 | doi = 10.1101/2021.04.11.439313

| s2cid = 233246026 | url = https://zenodo.org/record/5838249 | via = Zenodo | doi-access = free }}</ref>

|Yes

|Yes

Line 113:

|Center/agent-based, on-/off-lattice, cellular automata, vertex-based, immersed boundary

|2D, 3D

| url = [https://github.com/Chaste/Chaste | via = GitHub }}<https:/ref>/github.com/Chaste/Chaste]

|<ref>{{cite web | title = Chaste

| url = https://github.com/Chaste/Chaste | via = GitHub }}</ref>

|Yes

|Yes

Line 129 ⟶ 128:

|[[OpenMP]]

|-

|EdgeBased<ref>{{Cite journal | vauthors = Brown PJ, Green JE, Binder BJ, Osborne JM |title=A rigid body framework for multi-cellular modelling | journal = Nature Computational Science | date = November 2021 | volume = 1 | issue = 11 | pages = 754–766 |doi= 10.1038/s43588-021-00154-4|biorxiv=10.1101/2021.02.10.430170|pmid=38217146 |s2cid=231939320 | url = https://www.biorxiv.org/content/biorxiv/early/2021/02/10/2021.02.10.430170.full.pdf }}</ref>

|Off-lattice, ODE solvers

|2D