List of sequence alignment software: Difference between revisions

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Line 60: \|- \| MMseqs2 \| Software suite to search and cluster huge sequence sets. Similar sensitivity to BLAST and PSI-BLAST but orders of magnitude faster \|\| Protein \|\| Steinegger M, Mirdita M, Galiez C, Söding J<ref>{{Cite journal\|last1=Steinegger\|first1=Martin\|last2=Soeding\|first2=Johannes\|date=2017-10-16\|journal=Nature Biotechnology\|volume=35\|issue=11\|pages=1026–1028\|title=MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets\|url=https://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3988.html\|doi=10.1038/nbt.3988\|pmid=29035372\|hdl=11858/00-001M-0000-002E-1967-3\|s2cid=402352\|hdl-access=free\|url-access=subscription}}</ref> \|\| 2017 \|- \| USEARCH Line 395: \|- \| [[MUSCLE (alignment software)\|MUSCLE]] \| Progressive-iterative alignment (v3), Probabilistic/consistency (v5) \|\| Both \|\| Local or global \|\| R. Edgar \|\| 2004 \|\| Public ___domain \|- \| Opal