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A '''virus''' is a tiny [[infectious agent]] that [[reproduction|reproduces]] inside the [[Cell (biology)|cells]] of living [[Host (biology)|hosts]]. When infected, the host cell is forced to rapidly produce thousands of identical copies of the original virus. Unlike most [[Organism|living things]], viruses do not have cells that divide; new viruses assemble in the infected host cell. But unlike simpler infectious agents like [[prion]]s, they contain [[Introduction to genetics|genes]], which allow them to [[Mutation|mutate]] and evolve. Over 4,800 [[List of virus species|species of viruses]] have been [[List of virus taxa|described in detail]]<ref name="pmid29754305">{{cite journal |vauthors=King AM, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Sanfaçon H, Siddell SG, Simmonds P, Varsani A, Zerbini FM, Davison AJ |s2cid=21670772 |title=Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee Taxonomy of Viruses (2018) |journal=Archives of Virology |volume=163 |issue=9 |date=September 2018 |page=2601 <!-- CITATION BOT DO NOT CHANGE THIS ... citation is specific to this page --> |pmid=29754305 |doi=10.1007/s00705-018-3847-1 |url=https://hal-pasteur.archives-ouvertes.fr/pasteur-01977332/file/King2018_Article_ChangesToTaxonomyAndTheInterna.pdf}}</ref> out of the millions in the environment. Their origin is unclear: some may have [[evolution|evolved]] from [[plasmid]]s—pieces of DNA that can move between cells—while others may have evolved from [[bacteria]].
Viruses are made of either two or three parts. All include [[gene]]s. These genes contain the encoded biological information of the virus and are built from either [[DNA]] or [[RNA]]. All viruses are also covered with a [[protein]] coat to protect the genes. Some viruses may also have an [[viral envelope|envelope]] of [[Lipid|fat-like substance]] that covers the protein coat, and makes them vulnerable to soap. A virus with this "viral envelope" uses it—along with specific [[Cell surface receptor|receptors]]—to enter a new host cell. Viruses vary in shape from the simple [[tobacco mosaic virus|helical]] and [[icosahedron|icosahedral]] to more [[bacteriophage|complex]] structures. Viruses range in size from 20 to 300 [[nanometre]]s; it would take 33,000 to 500,000 of them,
Viruses spread in many ways. Although many are very specific about which host species or [[Tissue (biology)|tissue]] they attack, each [[species]] of virus relies on a particular method to copy itself. [[Plant pathology#Viruses, viroids and virus-like organisms|Plant viruses]] are often spread from plant to plant by insects and other [[organism]]s, known as ''[[Vector (epidemiology)|vectors]]''. Some [[Virus#Role in human disease|viruses of humans]] and other animals are spread by exposure to infected bodily fluids. Viruses such as [[influenza]] are spread through the air by droplets of moisture when people cough or sneeze. Viruses such as [[norovirus]] are transmitted by the [[fecal–oral route|faecal–oral route]], which involves the contamination of hands, food and water. [[Rotavirus]] is often spread by direct contact with infected children. The human immunodeficiency virus, [[HIV]], is transmitted by bodily fluids transferred during sex. Others, such as the [[dengue virus]], are spread by [[Hematophagy|blood-sucking insects]].
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In 1884, French [[microbiologist]] [[Charles Chamberland]] invented the [[Chamberland filter]] (or Chamberland–Pasteur filter), that contains pores smaller than [[bacteria]]. He could then pass a solution containing bacteria through the filter, and completely remove them. In the early 1890s, Russian [[biologist]] [[Dmitri Ivanovsky]] used this method to study what became known as the [[tobacco mosaic virus]]. His experiments showed that extracts from the crushed leaves of infected tobacco plants remain infectious after filtration.<ref>{{harvnb|Shors|2017|p=6}}</ref>
At the same time, several other scientists showed that, although these agents (later called viruses) were different from bacteria and about one hundred times smaller, they could still cause disease. In 1899, Dutch microbiologist [[Martinus Beijerinck]] observed that the agent only multiplied when in [[cell division|dividing cells]]. He called it a "contagious living fluid" ({{langx|la|text= [[contagium vivum fluidum]]}})—or a "soluble living germ" because he could not find any germ-like particles.
The invention of the [[electron microscope]] in 1931 brought the first images of viruses.<ref>From ''Nobel Lectures, Physics 1981–1990'', (1993) Editor-in-Charge Tore Frängsmyr, Editor Gösta Ekspång, World Scientific Publishing Co., Singapore</ref> In 1935, American [[biochemist]] and [[virologist]] [[Wendell Meredith Stanley]] examined the tobacco mosaic virus (TMV) and found it to be mainly made from [[protein]].<ref>{{cite journal | vauthors = Stanley WM, Loring HS | year = 1936 | title = The isolation of crystalline tobacco mosaic virus protein from diseased tomato plants | journal = Science | volume = 83 | issue = 2143| page = 85 | pmid = 17756690 | doi = 10.1126/science.83.2143.85 |bibcode = 1936Sci....83...85S }}</ref> A short time later, this virus was shown to be made from protein and [[RNA]].<ref>{{cite journal | doi = 10.1126/science.89.2311.345 | vauthors = Stanley WM, Lauffer MA | year = 1939 | title = Disintegration of tobacco mosaic virus in urea solutions |journal = Science | volume = 89 | issue = 2311| pages = 345–347 | pmid = 17788438 |bibcode = 1939Sci....89..345S }}</ref> [[Rosalind Franklin]] developed [[X-ray crystallography|X-ray crystallographic pictures]] and determined the full structure of TMV in 1955.<ref name="pmid18702397">{{cite journal | vauthors = Creager AN, Morgan GJ | title = After the double helix: Rosalind Franklin's research on Tobacco mosaic virus | journal = Isis; an International Review Devoted to the History of Science and Its Cultural Influences | volume = 99 | issue = 2 | pages = 239–272 | date = June 2008 | pmid = 18702397 | doi = 10.1086/588626 | s2cid = 25741967 }}</ref> Franklin confirmed that viral proteins formed a spiral hollow tube, wrapped by RNA, and also showed that viral RNA was a single strand, not a double helix like DNA.<ref name="Johnson">{{cite journal |last1=Johnson |first1=Ben |title=Rosalind Franklin's contributions to virology |journal=Nature Portfolio Microbiology Community |date=25 July 2017 |url=https://microbiologycommunity.nature.com/posts/18900-rosalind-franklin-s-contributions-to-virology |access-date=7 January 2022 |language=en}}</ref>
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[[File:Basic Scheme of Virus en.svg|thumb|Simplified diagram of the structure of a virus]]
A virus particle, also called a [[virion]], consists of genes made from DNA or RNA which are surrounded by a protective coat of protein called a [[capsid]].
=== Size ===
[[File:Virus size.png|right|thumb|Virions of some of the most common human viruses with their relative size. The nucleic acids are not to scale.]]
Viruses are among the smallest infectious agents, and are too small to be seen by [[Optical microscope|light microscopy]]; most of them can only be seen by [[electron microscopy]]. Their sizes range from 20 to 300 [[nanometre]]s; it would take 30,000 to 500,000 of them,
=== Genes ===
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== Effects on the host cell ==
Viruses have an extensive range of structural and biochemical effects on the host cell.{{sfn | Oxford |Kellam|Collier| 2016 | p=34–36}} These are called ''[[cytopathic effect]]s''.{{sfn | Oxford |Kellam|Collier| 2016 | p=34}} Most virus infections eventually result in the death of the host cell. The causes of death include cell lysis (bursting), alterations to the cell's surface membrane and [[apoptosis]] (cell "suicide").<ref name="pmid28846635">{{cite journal |vauthors=Okamoto T, Suzuki T, Kusakabe S, Tokunaga M, Hirano J, Miyata Y, Matsuura Y |title=Regulation of Apoptosis during Flavivirus Infection |journal=Viruses |volume=9 |issue=9 |pages= 243|year= 2017 |pmid=28846635 |pmc=5618009 |doi=10.3390/v9090243|doi-access=free }}</ref> Often cell death is caused by cessation of its normal activity due to proteins produced by the virus, not all of which are components of the virus particle.<ref name="pmid18637511">{{cite
Some viruses cause no apparent changes to the infected cell. Cells in which the virus is [[virus latency|latent]] (inactive) show few signs of infection and often function normally.<ref name="pmid18164651">{{cite journal | vauthors = Sinclair J | title = Human cytomegalovirus: Latency and reactivation in the myeloid lineage | journal = J. Clin. Virol. | volume = 41 | issue = 3 | pages = 180–185 | date = March 2008 | pmid = 18164651 | doi = 10.1016/j.jcv.2007.11.014 }}</ref> This causes persistent infections and the virus is often dormant for many months or years. This is often the case with [[herpes simplex|herpes viruses]].<ref name="pmid6326635">{{cite journal | vauthors = Jordan MC, Jordan GW, Stevens JG, Miller G | title = Latent herpesviruses of humans | journal = Ann. Intern. Med. | volume = 100 | issue = 6 | pages = 866–880 | date = June 1984 | pmid = 6326635 | doi = 10.7326/0003-4819-100-6-866 }}</ref><ref name="pmid12076064">{{cite journal | vauthors = Sissons JG, Bain M, Wills MR | s2cid = 24879226 | title = Latency and reactivation of human cytomegalovirus | journal = J. Infect. | volume = 44 | issue = 2 | pages = 73–77 | date = February 2002 | pmid = 12076064 | doi = 10.1053/jinf.2001.0948}}</ref>
Some viruses, such as [[Epstein–Barr virus]], often cause cells to proliferate without causing [[malignancy]];<ref name="pmid18035323">{{cite journal | vauthors = Barozzi P, Potenza L, Riva G, Vallerini D, Quadrelli C, Bosco R, Forghieri F, Torelli G, Luppi M | title = B cells and herpesviruses: a model of lymphoproliferation | journal = Autoimmun Rev | volume = 7 | issue = 2 | pages = 132–136 | date = December 2007 | pmid = 18035323 | doi = 10.1016/j.autrev.2007.02.018 | hdl = 11380/598275 | hdl-access = free }}</ref> but some other viruses, such as [[papillomavirus]], are an established cause of cancer.<ref name="pmid28798073">{{cite journal |vauthors=Graham SV |title=The human papillomavirus replication cycle, and its links to cancer progression: a comprehensive review |journal=Clinical Science |volume=131 |issue=17 |pages=2201–2221 |year= 2017 |pmid=28798073 |doi=10.1042/CS20160786 |doi-access=free }}</ref> When a cell's DNA is damaged by a virus such that the cell cannot repair itself, this often triggers apoptosis. One of the results of apoptosis is destruction of the damaged DNA by the cell itself. Some viruses have mechanisms to limit apoptosis so that the host cell does not die before progeny viruses have been produced; [[HIV]], for example, does this.<ref name="pmid10547702">{{cite journal | vauthors = Roulston A, Marcellus RC, Branton PE | title = Viruses and apoptosis | journal = Annu. Rev. Microbiol. | volume = 53 | pages = 577–628 | date = 1999 | pmid = 10547702 | doi = 10.1146/annurev.micro.53.1.577 }}</ref>
== Viruses and diseases ==
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==== Endemic ====
If the proportion of carriers in a given population reaches a given threshold, a disease is said to be [[Endemic (epidemiology)|endemic]].{{sfn | Oxford |Kellam|Collier| 2016 | p=63}} Before the advent of vaccination, infections with viruses were common and outbreaks occurred regularly. In countries with a temperate climate, viral diseases are usually seasonal. [[Poliomyelitis]], caused by [[poliovirus]] often occurred in the summer months.<ref name="pmid29961515">{{cite journal |vauthors=Strand LK |title=The Terrible Summer of 1952 … When Polio Struck Our Family |journal=Seminars in Pediatric Neurology |volume=26 |pages=39–44 |date=July 2018 |pmid=29961515 |doi=10.1016/j.spen.2017.04.001 |s2cid=49640682 }}</ref> By contrast colds, influenza and rotavirus infections are usually a problem during the winter months.<ref name="pmid22958213">{{cite journal |vauthors=Moorthy M, Castronovo D, Abraham A, Bhattacharyya S, Gradus S, Gorski J, Naumov YN, Fefferman NH, Naumova EN |title=Deviations in influenza seasonality: odd coincidence or obscure consequence? |journal=Clinical Microbiology and Infection |volume=18 |issue=10 |pages=955–962 |date=October 2012 |pmid=22958213 |pmc=3442949 |doi=10.1111/j.1469-0691.2012.03959.x }}</ref><ref name="pmid25777068">{{cite journal |vauthors=Barril PA, Fumian TM, Prez VE, Gil PI, Martínez LC, Giordano MO, Masachessi G, Isa MB, Ferreyra LJ, Ré VE, Miagostovich M, Pavan JV, Nates SV |title=Rotavirus seasonality in urban sewage from Argentina: effect of meteorological variables on the viral load and the genetic diversity |journal=Environmental Research |volume=138 |pages=409–415 |date=April 2015 |pmid=25777068 |doi=10.1016/j.envres.2015.03.004 |bibcode=2015ER....138..409B |hdl=11336/61497 |hdl-access=free }}</ref> Other viruses, such as [[measles virus]], caused outbreaks regularly every third year.<ref name="pmid25444814">{{cite journal |vauthors=Durrheim DN, Crowcroft NS, Strebel PM |title=Measles – The epidemiology of elimination |journal=Vaccine |volume=32 |issue=51 |pages=6880–6883 |date=December 2014 |pmid=25444814 |doi=10.1016/j.vaccine.2014.10.061 |doi-access=free |hdl=1959.13/1299149 |hdl-access=free }}</ref> In developing countries, viruses that cause respiratory and enteric infections are common throughout the year. Viruses carried by insects are a common cause of diseases in these settings. [[Zika]] and [[dengue virus]]es for example are transmitted by female [[Aedes]] mosquitoes, which bite humans particularly during the mosquitoes' breeding season.<ref name="pmid32103776">{{cite journal |vauthors=Mbanzulu KM, Mboera LE, Luzolo FK, Wumba R, Misinzo G, Kimera SI |title=Mosquito-borne viral diseases in the Democratic Republic of the Congo: a review |journal=Parasites & Vectors |volume=13 |issue=1 |
==== Pandemic and emergent ====
[[File:SIV primates.jpg|right|400px|thumb|Left to right: the [[African green monkey]], source of [[Simian immunodeficiency virus|SIV]]; the [[sooty mangabey]], source of [[HIV-2]]; and the [[Common chimpanzee|chimpanzee]], source of [[HIV-1]]]]
[[File:Orgin and evolution of SARS.jpg|thumb|Origin and evolution of (A) SARS-CoV, (B) MERS-CoV, and (C) SARS-CoV-2 in different hosts. All the viruses came from bats as coronavirus-related viruses before mutating and adapting to intermediate hosts and then to humans and causing the diseases [[SARS]], [[MERS]] and [[COVID-19]]. (<small>Adapted from Ashour et al. (2020)</small> <ref name="pmid32143502">{{cite journal |vauthors=Ashour HM, Elkhatib WF, Rahman MM, Elshabrawy HA |title=Insights into the Recent 2019 Novel Coronavirus (SARS-CoV-2) in Light of Past Human Coronavirus Outbreaks |journal=Pathogens (Basel, Switzerland) |volume=9 |issue=3 |pages= 186|date=March 2020 |pmid=32143502 |doi=10.3390/pathogens9030186 |pmc=7157630 |doi-access=free }}</ref>)]]
Although viral [[pandemic]]s are rare events, HIV—which evolved from viruses found in monkeys and chimpanzees—has been pandemic since at least the 1980s.<ref name="pmid29460740">{{cite journal |vauthors=Eisinger RW, Fauci AS |title=Ending the HIV/AIDS Pandemic1 |journal=Emerging Infectious Diseases |volume=24 |issue=3 |pages=413–416 |date=March 2018 |pmid=29460740 |pmc=5823353 |doi=10.3201/eid2403.171797 }}</ref> During the 20th century there were four pandemics caused by influenza virus and those that occurred in [[Spanish flu|1918]], [[1957–1958 influenza pandemic|1957]] and [[Hong Kong flu|1968]] were severe.<ref name="pmid30180422">{{cite journal |vauthors=Qin Y, Zhao MJ, Tan YY, Li XQ, Zheng JD, Peng ZB, Feng LZ |title=[History of influenza pandemics in China during the past century] |language=zh |journal=Zhonghua Liu Xing Bing Xue Za Zhi = Zhonghua Liuxingbingxue Zazhi |volume=39 |issue=8 |pages=1028–1031 |date=August 2018 |doi=10.3760/cma.j.issn.0254-6450.2018.08.003 |doi-broken-date=1 July 2025 |pmid=30180422 }}</ref> Before its eradication, smallpox was a cause of pandemics for more than 3,000 years.<ref name="pmid26060873">{{cite journal |vauthors=Nishiyama Y, Matsukuma S, Matsumura T, Kanatani Y, Saito T |title=Preparedness for a smallpox pandemic in Japan: public health perspectives |journal=Disaster Medicine and Public Health Preparedness |volume=9 |issue=2 |pages=220–223 |date=April 2015 |pmid=26060873 |doi=10.1017/dmp.2014.157 |s2cid=37149836 }}</ref> Throughout history, human migration has aided the spread of pandemic infections; first by sea and in modern times also by air.<ref name="pmid30878442">{{cite journal |vauthors=Houghton F |title=Geography, global pandemics & air travel: Faster, fuller, further & more frequent |journal=Journal of Infection and Public Health |volume=12 |issue=3 |pages=448–449 |date=2019 |pmid=30878442 |doi=10.1016/j.jiph.2019.02.020 |pmc=7129534 }}</ref>
With the exception of smallpox, most pandemics are caused by newly evolved viruses. These [[Emergent virus|"emergent"]] viruses are usually mutants of less harmful viruses that have circulated previously either in humans or in other animals.<ref>{{Cite web|url=https://virologyj.biomedcentral.com/articles/sections/emerging-viruses|title=Virology Journal|website=Virology Journal}}</ref>
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{{Main|Plant pathology}}
[[File:Pepper mild mottle virus.png|thumb|125px|[[Capsicum|Peppers]] infected by [[
There are many types of [[plant virus]], but often they only cause a decrease in [[crop yield|yield]], and it is not economically viable to try to control them. Plant viruses are frequently spread from plant to plant by organisms called "[[Vector (epidemiology)|vectors]]". These are normally insects, but some [[fungi]], [[nematode]] worms and [[protozoa|single-celled organisms]] have also been shown to be vectors. When control of plant virus infections is considered economical (perennial fruits, for example) efforts are concentrated on killing the vectors and removing alternate hosts such as weeds.<ref>{{harvnb|Shors|2017|p=822}}</ref> Plant viruses are harmless to humans and other animals because they can only reproduce in living plant cells.<ref>{{harvnb|Shors|2017|pp=802–803}}</ref>
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Their effects are far-reaching; by increasing the amount of respiration in the oceans, viruses are indirectly responsible for reducing the amount of carbon dioxide in the atmosphere by approximately 3 [[gigatonne]]s of carbon per year.<ref name="pmid17853907" />
Marine mammals are also susceptible to viral infections. In 1988 and 2002, thousands of harbour seals were killed in Europe by [[phocine distemper virus]].<ref>{{cite journal | vauthors = Hall A, Jepson P, Goodman S, Harkonen T | title= Phocine distemper virus in the North and European Seas – Data and models, nature and nurture | journal= Biological Conservation | volume= 131 | issue= 2 | pages= 221–229 | year= 2006 |doi = 10.1016/j.biocon.2006.04.008 | bibcode= 2006BCons.131..221H }}</ref> Many other viruses, including [[caliciviruses]], [[Herpesviridae|herpesviruses]],
Viruses can also serve as an alternative food source for microorganisms which engage in [[Virovore|virovory]], supplying nucleic acids, nitrogen, and phosphorus through their consumption.<ref name="New Virovore">{{Cite journal |last1=DeLong |first1=John P. |last2=Van Etten |first2=James L. |last3=Al-Ameeli |first3=Zeina |last4=Agarkova |first4=Irina V. |last5=Dunigan |first5=David D. |date=2023-01-03 |title=The consumption of viruses returns energy to food chains |journal=Proceedings of the National Academy of Sciences |language=en |volume=120 |issue=1 |pages=e2215000120 |doi=10.1073/pnas.2215000120 |doi-access=free |pmid=36574690 |pmc=9910503 |bibcode=2023PNAS..12015000D |issn=0027-8424}}</ref><ref name="First Virovore">{{cite news |last1=Irving |first1=Michael |title=First "virovore" discovered: An organism that eats viruses |url=https://newatlas.com/science/first-virovore-eats-viruses/ |access-date=29 December 2022 |publisher=New Atlas |date=28 December 2022 |archive-url=https://web.archive.org/web/20221229023549/https://newatlas.com/science/first-virovore-eats-viruses/ |archive-date=29 December 2022}}</ref>
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{{Refbegin}}
*{{cite book | editor-last = Collier | editor-first =Leslie |editor-last2=Balows| editor-first2 =Albert | editor-last3 =Sussman | editor-first3 =Max | title = Topley & Wilson's Microbiology and Microbial Infections | publisher = Arnold | year = 1998 | isbn = 0-340-66316-2 |edition=9th|volume=1, ''Virology''}}
* {{cite book | last1=Howley | first1=Peter M. | last2=Knipe | first2=David M. | last3=Enquist | first3=Lynn W. | title=Fields Virology: Fundamentals | publisher=LWW | publication-place=Philadelphia | date=2023-09-25 | isbn=978-1-9751-1251-6}}
*{{cite book | last1=Oxford
| first1=John |last2=Kellam|first2=Paul|last3=Collier|first3=Leslie|
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