Coding region: Difference between revisions

Content deleted Content added
GreenC bot (talk | contribs)
Citation bot (talk | contribs)
Added article-number. Removed parameters. Some additions/deletions were parameter name changes. | Use this bot. Report bugs. | Suggested by Abductive | Category:Biochemistry | #UCB_Category 20/248
 
Line 17:
GC-rich areas are also where the ratio [[point mutation]] type is altered slightly: there are more [[Transition (genetics)|transitions]], which are changes from purine to purine or pyrimidine to pyrimidine, compared to [[transversion]]s, which are changes from purine to pyrimidine or pyrimidine to purine. The transitions are less likely to change the encoded amino acid and remain a [[silent mutation]] (especially if they occur in the third [[nucleotide]] of a codon) which is usually beneficial to the organism during translation and protein formation.<ref>{{Cite web|url=http://rosalind.info/glossary/gene-coding-region/|title=ROSALIND {{!}} Glossary {{!}} Gene coding region|website=rosalind.info|access-date=2019-10-31}}</ref>
 
This indicates that essential coding regions (gene-rich) are higher in GC-content and more stable and resistant to [[mutation]] compared to accessory and non-essential regions (gene-poor).<ref>{{cite journal | vauthors = Vinogradov AE | title = DNA helix: the importance of being GC-rich | journal = Nucleic Acids Research | volume = 31 | issue = 7 | pages = 1838–44 | date = April 2003 | pmid = 12654999 | pmc = 152811 | doi = 10.1093/nar/gkg296 }}</ref> However, it is still unclear whether this came about through neutral and random mutation or through a pattern of [[Natural selection|selection]].<ref>{{cite journal | vauthors = Bohlin J, Eldholm V, Pettersson JH, Brynildsrud O, Snipen L | title = The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes | journal = BMC Genomics | volume = 18 | issue = 1 | pagesarticle-number = 151 | date = February 2017 | pmid = 28187704 | pmc = 5303225 | doi = 10.1186/s12864-017-3543-7 | doi-access = free }}</ref> There is also debate on whether the methods used, such as gene windows, to ascertain the relationship between GC-content and coding region are accurate and unbiased.<ref>{{cite journal | vauthors = Sémon M, Mouchiroud D, Duret L | title = Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance | journal = Human Molecular Genetics | volume = 14 | issue = 3 | pages = 421–7 | date = February 2005 | pmid = 15590696 | doi = 10.1093/hmg/ddi038 | doi-access = free }}</ref>
 
== Structure and function ==