Fast statistical alignment: Difference between revisions

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Revision as of 23:28, 17 June 2024 edit Lindsey40186 (talk \| contribs) Extended confirmed users 8,187 edits tagged: no inline citations (and only 4 sources?); ce Tags: nowiki added Visual edit ← Previous edit		Latest revision as of 19:40, 9 August 2025 edit undo Bender the Bot (talk \| contribs) Bots 1,064,377 edits m →External links: HTTP to HTTPS for SourceForge Tag: AWB
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Line 1: {{No inline\|date=June 2024}}{{Infobox Software\|name=FSA\|developer=Robert Bradley ([[UC Berkeley]]), Colin Dewey ([[UW Madison]]), [[Lior Pachter]] ([[UC Berkeley]])\|latest_release_version=1.5.2\|operating_system=[[UNIX]], [[Linux]], [[Apple Macintosh\|Mac]]\|genre=Bioinformatics tool\|licence=Open source}} '''Fast statistical alignment''' or ('''FSA''') is a [[multiple sequence alignment]] program for aligning many proteins, [[RNA]]~~<nowiki/>~~s, or long genomic [[Nucleic acid sequence\|DNA sequences]]. Along with [[MUSCLE (alignment software)\|MUSCLE]] and [[MAFFT]], FSA is one of the few sequence alignment programs which can align datasets of hundreds or thousands of sequences. FSA uses a different optimization criterion which allows it to more reliably identify non-homologous sequences than these other programs, although this increased accuracy comes at the cost of decreased speed. FSA is currently being used for multiple projects, including sequencing new worm genomes and analyzing ''in vivo'' transcription factor binding in flies. Line 48: == External links == * [https://web.archive.org/web/20090430184649/http://orangutan.math.berkeley.edu/fsa/ FSA web server] * [~~http~~https://fsa.sourceforge.net/ FSA source code] [[Category:Bioinformatics]]