Sequence clustering: Difference between revisions

Revision as of 04:37, 19 February 2022

Revision as of 20:05, 14 March 2022

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* BAG: a graph theoretic sequence clustering algorithm<ref>{{cite web |url=http://bio.informatics.indiana.edu/sunkim/BAG/ |title=Archived copy |access-date=2004-02-19 |url-status=dead |archive-url=https://web.archive.org/web/20031206172749/http://bio.informatics.indiana.edu/sunkim/BAG/ |archive-date=2003-12-06 }}</ref>

* JESAM:<ref>{{cite web|url=http://www.littlest.co.uk/software/bioinf/old_packages/jesam/jesam_paper.html|title=Bioinformatics Paper: JESAM: CORBA software components for EST alignments and clusters|work=littlest.co.uk}}</ref> Open source parallel scalable DNA alignment engine with optional clustering software component

* UICluster:<ref>{{cite web |url=http://ratest.eng.uiowa.edu/pubsoft/clustering/ {{Dead|title=pedretti@eyeball -- Clustering Page link|datewebsite=Februaryratest.eng.uiowa.edu 2022|url-status=dead |archive-url=https://web.archive.org/web/20050409134817/http://ratest.eng.uiowa.edu/pubsoft/clustering/ |archive-date=2005-04-09}} </ref> Parallel Clustering of EST (Gene) Sequences

* BLASTClust single-linkage clustering with BLAST<ref>{{cite web|url=https://www.ncbi.nlm.nih.gov/Web/Newsltr/Spring04/blastlab.html|title=NCBI News: Spring 2004-BLASTLab|work=nih.gov}}</ref>

* Clusterer:<ref>{{cite web|url=http://bugaco.com/bioinf/clusterer/|title=Clusterer: extendable java application for sequence grouping and cluster analyses|work=bugaco.com}}</ref> extendable java application for sequence grouping and cluster analyses