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| doi-access = free
}}</ref>
* [[GenPipes]] A flexible and powerful Python-based framework that facilitates the development and deployment of multi-step genomic workflows, optimized for High-Performance Computing (HPC) clusters and the cloud <ref>{{Cite journal |last=Mathieu Bourgey, Rola Dali, Robert Eveleigh, Kuang Chung Chen, Louis Letourneau, Joel Fillon, Marc Michaud, Maxime Caron, Johanna Sandoval, Francois Lefebvre, Gary Leveque, Eloi Mercier, David Bujold, Pascale Marquis, Patrick Tran Van, David Anderson de Lima Morais, Julien Tremblay, Xiaojian Shao, Edouard Henrion, Emmanuel Gonzalez, Pierre-Olivier Quirion, Bryan Caron, Guillaume Bourque |title=GenPipes: an open-source framework for distributed and scalable genomic analyses |url=https://academic.oup.com/gigascience/article/8/6/giz037/5513895 |journal=GigaScience |volume=Volume 8, Issue 6, June 2019}}</ref>
* Snakemake python-driven implimentation of the [[Make (software)|Makefile]] for automatic compilation and exectution of workflows
* Nextflow
* [[VisTrails]]<ref>{{Cite book | doi = 10.1109/VISUAL.2005.1532788 | title = VisTrails: enabling interactive multiple-view visualizations| year = 2005 | journal=VIS 05. IEEE Visualization, 2005.| pages = 135–142| last1 = Bavoil| first1 = L.| last2 = Callahan| first2 = S.P.| last3 = Crossno| first3 = P.J.| last4 = Freire| first4 = J.| last5 = Scheidegger| first5 = C.E.| last6 = Silva| first6 = C.T.| last7 = Vo| first7 = H.T.| isbn = 978-0-7803-9462-9}}</ref>
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