Approximate Bayesian computation: Difference between revisions

Revision as of 03:47, 19 August 2023

Revision as of 10:39, 2 September 2023

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<!-- <ref name="Excoffier">{{cite journal | last1 = Excoffier | first1 = L | last2 = Foll | first2 = M | year = 2011 | title = fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios | journal = Bioinformatics | volume = 27 | pages = 1332–1334 | doi=10.1093/bioinformatics/btr124 | pmid=21398675}}</ref> -->

<ref name="Wegmann2010">{{cite journal | last1 = Wegmann | first1 = D | last2 = Leuenberger | first2 = C | last3 = Neuenschwander | first3 = S | last4 = Excoffier | first4 = L | year = 2010 | title = ABCtoolbox: a versatile toolkit for approximate Bayesian computations | journal = BMC Bioinformatics | volume = 11 | page = 116 | doi=10.1186/1471-2105-11-116| pmid = 20202215 | pmc = 2848233 | doi-access = free }}</ref>

<!-- <ref name="Cornuet">{{cite journal | last1 = Cornuet | first1 = J-M | last2 = Santos | first2 = F | last3 = Beaumont | first3 = MA | last4 = Robert | first4 = CP | last5 = Marin | first5 = J-M |display-authors=et al | year = 2008 | title = Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation | journal = Bioinformatics | volume = 24 | pages = 2713–2719 | doi=10.1093/bioinformatics/btn514 | pmid=18842597 | pmc=2639274}}</ref> -->

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<ref name="Csillery12">{{cite journal | last1 = Csilléry | first1 = K | last2 = François | first2 = O | last3 = Blum | first3 = MGB | year = 2012 | title = abc: an R package for approximate Bayesian computation (ABC) | journal = Methods in Ecology and Evolution | volume = 3 | issue = 3| pages = 475–479 | doi=10.1111/j.2041-210x.2011.00179.x| arxiv = 1106.2793 | s2cid = 16679366 }}</ref>

<ref name="Liepe10">{{cite journal | last1 = Liepe | first1 = J | last2 = Barnes | first2 = C | last3 = Cule | first3 = E | last4 = Erguler | first4 = K | last5 = Kirk | first5 = P | last6 = Toni | first6 = T | last7 = Stumpf | first7 = MP | year = 2010 | title = ABC-SysBio—approximate Bayesian computation in Python with GPU support | journal = Bioinformatics | volume = 26 | issue = 14| pages = 1797–1799 | doi=10.1093/bioinformatics/btq278| pmid = 20591907 | pmc = 2894518 }}</ref>

<ref name="Hickerson07">{{cite journal | last1 = Hickerson | first1 = MJ | last2 = Stahl | first2 = E | last3 = Takebayashi | first3 = N | year = 2007 | title = msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation | journal = BMC Bioinformatics | volume = 8 | issue = 268| pages = 1471–2105 | doi=10.1186/1471-2105-8-268| pmid = 17655753 | pmc = 1949838 | doi-access = free }}</ref>

<ref name="Lopes09">{{cite journal | last1 = Lopes | first1 = JS | last2 = Balding | first2 = D | last3 = Beaumont | first3 = MA | year = 2009 | title = PopABC: a program to infer historical demographic parameters | journal = Bioinformatics | volume = 25 | issue = 20| pages = 2747–2749 | doi=10.1093/bioinformatics/btp487| pmid = 19679678 | doi-access = }}</ref>

<ref name="Tallmon08">{{cite journal | last1 = Tallmon | first1 = DA | last2 = Koyuk | first2 = A | last3 = Luikart | first3 = G | last4 = Beaumont | first4 = MA | year = 2008 | title = COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation | journal = Molecular Ecology Resources | volume = 8 | issue = 2| pages = 299–301 | doi=10.1111/j.1471-8286.2007.01997.x| pmid = 21585773 | s2cid = 9848290 }}</ref>