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m Disambiguating links to Blast (link changed to BLAST (biotechnology)) using DisamAssist. |
m Open access bot: hdl updated in citation with #oabot. |
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| [[CS-BLAST]]
| Sequence-context specific BLAST, more sensitive than BLAST, FASTA, and SSEARCH. Position-specific iterative version CSI-BLAST more sensitive than PSI-BLAST || Protein || Angermueller C, Biegert A, Soeding J<ref>{{Cite journal |last1= Angermüller |first1= C. |last2= Biegert |first2= A. |last3= Söding |first3= J. |title= Discriminative modelling of context-specific amino acid substitution probabilities |journal= Bioinformatics |volume= 28 |issue= 24 |pages= 3240–7|date=Dec 2012 |doi= 10.1093/bioinformatics/bts622 |pmid=23080114|doi-access= free |hdl= 11858/00-001M-0000-0015-8D22-F |hdl-access= free }}</ref>
|| 2013
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| [[HH-suite]]
| Pairwise comparison of profile Hidden Markov models; very sensitive || Protein || Söding J<ref>{{Cite journal|author=Söding J |title=Protein homology detection by HMM-HMM comparison |journal=Bioinformatics |volume=21 |issue=7 |pages=951–60 |date=April 2005 |pmid=15531603 |doi=10.1093/bioinformatics/bti125|doi-access=free |hdl=11858/00-001M-0000-0017-EC7A-F |hdl-access=free }}</ref><ref>{{Cite journal|last1=Remmert|first1=Michael|last2=Biegert|first2=Andreas|last3=Hauser|first3=Andreas|last4=Söding|first4=Johannes|date=2011-12-25|title=HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment|journal=Nature Methods|volume=9|issue=2|pages=173–175|doi=10.1038/nmeth.1818|issn=1548-7105|pmid=22198341|hdl=11858/00-001M-0000-0015-8D56-A|s2cid=205420247|hdl-access=free}}</ref> ||2005/2012
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| IDF
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