Approximate Bayesian computation: Difference between revisions

Revision as of 19:54, 29 December 2024

Revision as of 05:20, 12 January 2025

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<ref name="Bharti">{{cite journal | last1 = Bharti | first1 = A | last2 = Briol | first2 = F.-X. | last3 = Pedersen | first3 = T | year = 2021 | title = A General Method for Calibrating Stochastic Radio Channel Models with Kernels | journal = IEEE Transactions on Antennas and Propagation | volume = 70 | issue = 6 | pages = 3986–4001 | doi=10.1109/TAP.2021.3083761| arxiv = 2012.09612 | s2cid = 233880538 }}</ref>

<ref name="Bertorelle">{{cite journal | last1 = Bertorelle | first1 = G | last2 = Benazzo | first2 = A | last3 = Mona | first3 = S | year = 2010 | title = ABC as a flexible framework to estimate demography over space and time: some cons, many pros | journal = Molecular Ecology | volume = 19 | issue = 13| pages = 2609–2625 | doi=10.1111/j.1365-294x.2010.04690.x| pmid = 20561199 | bibcode = 2010MolEc..19.2609B | s2cid = 12129604 | doi-access = free }}</ref>

<ref name="Csillery">{{cite journal | last1 = Csilléry | first1 = K | last2 = Blum | first2 = MGB | last3 = Gaggiotti | first3 = OE | last4 = François | first4 = O | year = 2010 | title = Approximate Bayesian Computation (ABC) in practice | journal = Trends in Ecology & Evolution | volume = 25 | issue = 7| pages = 410–418 | doi=10.1016/j.tree.2010.04.001| pmid = 20488578 | bibcode = 2010TEcoE..25..410C | s2cid = 13957079 }}</ref>

<ref name="Rubin">{{cite journal | last1 = Rubin | first1 = DB | year = 1984 | title = Bayesianly Justifiable and Relevant Frequency Calculations for the Applied Statistician | journal = The Annals of Statistics | volume = 12 | issue = 4| pages = 1151–1172 | doi=10.1214/aos/1176346785| doi-access = free }}</ref>

<ref name="Marjoram">{{cite journal | last1 = Marjoram | first1 = P | last2 = Molitor | first2 = J | last3 = Plagnol | first3 = V | last4 = Tavare | first4 = S | year = 2003 | title = Markov chain Monte Carlo without likelihoods | journal = Proc Natl Acad Sci U S A | volume = 100 | issue = 26| pages = 15324–15328 | doi=10.1073/pnas.0306899100| pmid = 14663152 | pmc = 307566 | bibcode = 2003PNAS..10015324M | doi-access = free }}</ref>

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<ref name="Dean">{{cite arXiv | eprint=1103.5399 | last1=Dean | first1=Thomas A. | last2=Singh | first2=Sumeetpal S. | last3=Jasra | first3=Ajay | last4=Peters | first4=Gareth W. | title=Parameter Estimation for Hidden Markov Models with Intractable Likelihoods | date=2011 | class=math.ST }}</ref>

<ref name="Fearnhead">{{cite arXiv | eprint=1004.1112 | last1=Fearnhead | first1=Paul | last2=Prangle | first2=Dennis | title=Constructing Summary Statistics for Approximate Bayesian Computation: Semi-automatic ABC | date=2010 | class=stat.ME }}</ref>

<ref name="Wilkinson">{{cite journal | arxiv=0811.3355 | doi=10.1515/sagmb-2013-0010 | title=Approximate Bayesian computation (ABC) gives exact results under the assumption of model error | date=2013 | last1=Wilkinson | first1=Richard David | journal=Statistical Applications in Genetics and Molecular Biology | volume=12 | issue=2 | pmid=23652634 }}</ref>

<ref name="Nunes">{{cite journal | last1 = Nunes | first1 = MA | last2 = Balding | first2 = DJ | year = 2010 | title = On optimal selection of summary statistics for approximate Bayesian computation | journal = Stat Appl Genet Mol Biol | volume = 9 | page = Article 34 | doi=10.2202/1544-6115.1576| pmid = 20887273 | s2cid = 207319754 }}</ref>

<ref name="Joyce">{{cite journal | last1 = Joyce | first1 = P | last2 = Marjoram | first2 = P | year = 2008 | title = Approximately sufficient statistics and bayesian computation | journal = Stat Appl Genet Mol Biol | volume = 7 | issue = 1| page = Article 26 | doi=10.2202/1544-6115.1389| pmid = 18764775 | s2cid = 38232110 }}</ref>

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<ref name="Toni">{{cite journal | last1 = Toni | first1 = T | last2 = Welch | first2 = D | last3 = Strelkowa | first3 = N | last4 = Ipsen | first4 = A | last5 = Stumpf | first5 = M | year = 2007 | title = Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems | journal = J R Soc Interface | volume = 6 | issue = 31| pages = 187–202 | pmid = 19205079 | pmc = 2658655 | doi = 10.1098/rsif.2008.0172 }}</ref>

<ref name="Tavare">{{cite journal | last1 = Tavaré | first1 = S | last2 = Balding | first2 = DJ | last3 = Griffiths | first3 = RC | last4 = Donnelly | first4 = P | year = 1997 | title = Inferring Coalescence Times from DNA Sequence Data | journal = Genetics | volume = 145 | issue = 2 | pages = 505–518 | doi = 10.1093/genetics/145.2.505 | pmc = 1207814 | pmid=9071603}}</ref>

<ref name="Toni2010">{{cite journal | doi=10.1093/bioinformatics/btp619 | title=Simulation-based model selection for dynamical systems in systems and population biology | date=2010 | last1=Toni | first1=Tina | last2=Stumpf | first2=Michael P. H. | journal=Bioinformatics | volume=26 | issue=1 | pages=104–110 | pmid=19880371 | pmc=2796821 | arxiv=0911.1705 }}</ref>

.<ref name="Pritchard1999">{{cite journal | last1 = Pritchard | first1 = JK | last2 = Seielstad | first2 = MT | last3 = Perez-Lezaun | first3 = A |display-authors=et al | year = 1999 | title = Population Growth of Human Y Chromosomes: A Study of Y Chromosome Microsatellites | journal = Molecular Biology and Evolution | volume = 16 | issue = 12| pages = 1791–1798 | doi=10.1093/oxfordjournals.molbev.a026091| pmid = 10605120 | doi-access = free }}</ref>

<ref name="Diggle">{{cite journal | last1 = Diggle | first1 = PJ | year = 1984 | title = Monte Carlo Methods of Inference for Implicit Statistical Models | journal = Journal of the Royal Statistical Society, Series B | volume = 46 | issue = 2 | pages = 193–227 | doi = 10.1111/j.2517-6161.1984.tb01290.x }}</ref>

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<ref name="Klinger2017">Klinger, E.; Rickert, D.; Hasenauer, J. (2017). pyABC: distributed, likelihood-free inference.</ref>

<ref name="Salvatier2016">{{cite journal | doi=10.7717/peerj-cs.55 | doi-access=free | title=Probabilistic programming in Python using PyMC3 | date=2016 | last1=Salvatier | first1=John | last2=Wiecki | first2=Thomas V. | last3=Fonnesbeck | first3=Christopher | journal=PeerJ Computer Science | volume=2 | pages=e55 | arxiv=1507.08050 }}</ref>

<ref name="Prangle">{{cite journal | doi=10.1515/sagmb-2013-0012 | title=Semi-automatic selection of summary statistics for ABC model choice| date=2014 | last1=Prangle | first1=Dennis | last2=Fearnhead | first2=Paul | last3=Cox | first3=Murray P. | last4=Biggs | first4=Patrick J. | last5=French | first5=Nigel P. | journal=Stat Appl Genet Mol Biol | volume=13| issue=1| pages=67–82 | pmid=24323893| arxiv=1302.5624 }}</ref>

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