Linguistic sequence complexity: Difference between revisions

Revision as of 09:03, 9 March 2012

Revision as of 09:09, 9 March 2012

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The sequence analysis complexity calculation method can be used to search for conserved regions between compared sequences for the detection of low-complexity regions including simple sequence repeats, imperfect [[Direct_repeat|direct]] or [[Inverted_repeat|inverted repeats]], polypurine and polypyrimidine [[Triple-stranded_DNA|triple-stranded DNA structures]], and four-stranded structures (such as [[G-quadruplex|G-quadruplexes]]) <ref>{{cite journal| author=Andrei Gabrielian, Alexander Bolshoy|year=1999| journal=Computer & Chemistry| title=Sequence complexity and DNA curvature| volume=23| pages=263-274| doi=10.1016/S0097-8485(99)00007-8}}</ref>, <ref>{{cite journal| author=Orlov Y.L.Yuriy Lvovich, Potapov Vladimir Nikilaevich V.N.|year=2004| journal=Nucleic Acids Res.| title=Complexity: an internet resource for analysis of DNA sequence complexity| volume=32| pages=W628–W633| doi=10.1093/nar/gkh466}}</ref>, <ref>{{cite journal| author=Svante Janson, Stefano Lonardi, Wojciech Szpankowski|year=2004| journal=Theoretical Computer Science| title=On average sequence complexity | volume=326| pages=213–227| doi=10.1016/j.tcs.2004.06.023}}</ref>, <ref>{{cite journal| author=Kalendar R, Lee D, Schulman AH |year=2011| journal=Genomics| title=Java web tools for PCR, <i>in silico</i> PCR, and oligonucleotide assembly and analysis|pmid=21569836|volume=98| issue=2| pages=137-144| doi=10.1016/j.ygeno.2011.04.009}}</ref>.

== References ==

{{reflist}}

{{Nucleic acids}}

[[Category:Nucleic acids]]

[[Category:Genetics]]

[[Category:Bioinformatics]]