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For gap dynamics to occur in naturally disturbed areas, either primary or secondary succession must occur. Ecological secondary succession is much more common and pertains to the process of vegetation replacement after a natural disturbance. Secondary succession results in second-growth or secondary forest, which currently covers more of the tropics than old-growth forest.
Since gaps let in more light and create diverse microclimates, they provide the ideal ___location and conditions for rapid plant reproduction and growth. In fact, most plant species in the tropics are dependent, at least in part, on gaps to complete their life cycles. <ref>{{cite book|last=Kricher|first=John|title=Tropical ecology|year=2011|publisher=Princeton University Press|___location=Princeton, New Jersey|pages=
==Disturbances==
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An example of a small scale disturbance is a tree falling. This can cause soil movement, which redistributes any nutrients or organisms that were attached to the tree. The tree falling also opens up the canopy for light entrance, which can support the growth of other trees and plants.
After a disturbance, there are several ways in which regeneration can occur. One way, termed the advance regeneration pathway, is when the primary understory already contains seedlings and saplings. This method is most common in the Neotropics when faced when small scale disturbances. The next pathway is from tree remains, or any growth from bases or roots, and is common in small disturbance gaps. The third route is referred to as the soil seed bank, and is the result of germination of seeds already found in the soil. The final regeneration pathway is the arrival of new seeds via animal dispersal or wind movement. The most critical components of the regeneration are seed distribution, germination, and survival. <ref>{{cite book|last=Kricher|first=John|title=Tropical ecology|year=2011|publisher=Princeton University Press|___location=Princeton, New Jersey|pages=
==Primary succession==
Succession is the slow rebuilding of forest gaps from natural or human disturbances. When major geological changes such as volcano eruptions or landslides occur, the current vegetation and soil may erode away leaving only rock. Primary succession occurs when pioneer species such as lichens colonize rock. As the lichens and mosses decompose, a soil substrate forms called peat. The peat, over time, will create a terrestrial ecosystem. From there on herbaceous, non-woody plants will develop and trees will follow. Major holes or gaps in the forest ecosystem will take hundreds of years to regenerate from a rock base.<ref>{{cite book|last=Brokaw|first=N.V.L.|title=The Ecology of Natural Disturbance and Patch Dynamics.|year=1985|publisher=Academic Press|___location=San Diego, California|pages=
==Secondary succession==
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Secondary succession occurs where a disturbance has taken place but soil remains and is able to support plant growth. It does not take nearly as long for plant regeneration to occur because of the soil substrate already present. Secondary succession is much more common than primary succession in the tropics.
Ecological secondary succession occurs in four distinct phases: First, rapid colonization of cleared land by species such as herbs, shrubs, and climbers as well as seedlings from pioneer tree species occurs and this can last up to three years. After that, short lived but fast growing shade intolerant species form a canopy over 10 to 30 years. Non-pioneer heliophilic (sun-loving) tree species then add to the biomass and species richness as well as shade tolerant species and this can last 75 to 150 years. Finally, shade-tolerant species regain full canopy stature indefinitely until another major disturbance occurs.<ref>{{cite journal|coauthors=Miguel Martínez-Ramos, Elena Alvarez-Buylla and José Sarukhán|title=Tree Demography and Gap Dynamics in a Tropical Rain Forest|journal=Ecology|year=1989|month=June|volume=70|issue=3|pages=
Secondary succession in the tropics begins with pioneer species, which are rapidly growing and include vines and shrubs. Once these species are established, large heliophilic species will develop such as heliconias. Cecropias are also a major pioneering tree in the tropics and they are adapted to grow well where forest gaps are giving way to sunlight. Shade-tolerant species that have remained low in the forest develop and become much taller. These successional phases do not have definite order or structure and because of the very high biodiversity in the tropics, there is a lot of competition for resources such as soil nutrients and sunlight.
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Species richness was higher in gaps than in control areas, and there was more diversity in species composition among gaps. However, this study also found that there was a low recruitment rate per gap, which explains why gaps differed in species composition. With 2% to 3% for pioneer species and 3% to 6% for shade-tolerant and intermediate species. Suggesting that most species could not take advantage of gaps because they couldn’t get to them through seed dispersal.
With that said, the Janzen-Connell effect plays a major role in the tree species’ relationship with gaps. The Janzen-Connell density dependent mortality model states that most trees die as seed or seedlings. In addition, host-specific predators or pathogens are predicted to be greatest where density is greatest, which is underneath parent tree. This corroborates with the major causes of gaps, which are the falling of trees due to mortality caused by termites or epiphyte growth. The Janzen-Connell model also states that balance between dispersal distance and mortality should cause highest recruitment to be at a certain distance away from the parent. Therefore if these gaps are being created by the parents, the seedlings recruit away from the gap, resulting in increasing survival rates as the distance from the parent increases. This explains the low recruitment rate per gap found in the experiment conducted in Barro Colorado Island.<ref>{{cite book|last=Hubbell, S. P. and R. B. Foster|title=Plant Ecology|year=1986|publisher=Blackwell|___location=Oxford, UK|pages=
In corroboration, a study conducted in La Selva in Costa Rica calculated the crown illumination index for nine tree species ranging from gap specialists to emergent canopy species. Crown illumination values ranged from 1, which indicated low light, and 6, which indicated that the tree crown was completely exposed . After using a mathematical model to calculate the changes in tree diameter and changes in crown illumination with age. This model helped estimate life expectancy, time of passage to various sizes, and age patterns of mortality. The results showed what most gap dynamics studies show, pioneer species thrived in high light environments and non-pioneer species showed high mortality when young but the rate of mortality decreased as they aged. However, once trees were very large survivorship then decreased.<ref>{{cite book|last=Clark|first=JS|title=Ecosystem Rehabilitation: Preamble to Sustained Development|year=1992|publisher=SPB Academic Publishing|pages=165–186}}</ref>
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