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In alphabetical order, some examples of bioinformatics workflow management systems include:
* [[Anduril (workflow engine)|Anduril]] bioinformatics and image analysis
* [[Anvaya Workflows|Anvaya Workflows]]: Anvaya is a software application consisting of interface to Bioinformatics tools and databases in a workflow environment, to execute the set of analyses tools in series or in parallel.<ref>{{cite pmid| 22809419|noedit}}</ref>
* [[BioExtract]]: a web-based system for querying biomolecular sequence data, executing analytic tools on the resulting extracts, and constructing workflows composed of such queries and tools.
* [[BioBIKE]]: a Web-based, programmable, integrated biological knowledge base<ref>{{cite pmid|19433511|noedit}}</ref>
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