Dot plot (bioinformatics): Difference between revisions

Revision as of 00:02, 10 January 2016

Revision as of 06:58, 3 April 2016

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</references>

== Software to create plots ==

== External links ==

* [http://sourceforge.net/projects/genomdiff Genomdiff] – anAn open source Java Dotdot Plotplot program for viruses.

* [http://mips.gsf.de/services/analysis/gepard Gepard] - Dot plot tool suitable for even genome scale.

* [http://www.csb.yale.edu/userguides/graphics/whatif/html/chap13.html ANACON] – Contact analysis of dot plots.

* [http://www.code10.info/index.php?option=com_content&view=category&id=52&Itemid=76 General introduction to dot plots with example algorithms] and a [http://www.code10.info/index.php?view=article&catid=50%3Acat_coding_software_serolis&id=63%3Aserolis-software-package-for-dot-plot-creation&option=com_content&Itemid=61 software tool to create small and medium size dot plots.]

* [http://myhits.isb-sib.ch/cgi-bin/dotlet Dotlet] – providesProvides a program allowing you to construct a dot plot with your own sequences.

* [httphttps://ugene.unipro.ru/documentationwiki/manualdisplay/pluginsUUOUM15/dotplot.htmlDotplot UGENE Dot Plot viewer] – opensourceOpensource Dotdot Plotplot visualizer.

* [https://cran.r-project.org/web/packages/seqinr/index.html seqinr] - R package to generate dot plots.

* [https://github.com/evolvedmicrobe/dotplot dotplot] - R package to rapidly generate dot plots as either traditional or ggplot graphics.

* [http://www.bioinformatics.nl/cgi-bin/emboss/dotmatcher dotmatcher] - Web tool to generate dot plots.

[[Category:Statistical charts and diagrams]]

[[Category:Bioinformatics]]