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* [[KNIME]] the Konstanz Information Miner<ref>{{Cite journal | doi = 10.1016/j.compbiolchem.2007.08.009| title = Workflow based framework for life science informatics| journal = Computational Biology and Chemistry| year = 2007| volume=31| pages=305–319}}</ref>
* [http://molquest.com/ MolQuest]: a comprehensive, easy-to-use desktop application for sequence analysis and molecular biology data management.
* [http://nextflow.io Nextflow] - A DSL for parallel and scalable computational pipelines.
* [[OnlineHPC]] Online workflow designer based on [[Taverna workbench|Taverna]]
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