Sequence clustering: Difference between revisions

Revision as of 06:17, 3 June 2016

Revision as of 20:58, 5 June 2016

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* Starcode:<ref>{{cite web|url=http://www.github.com/gui11aume/starcode|title=Starcode repository}}</ref> a fast sequence clustering algorithm based on exact all-pairs search.<ref>{{cite journal

|title=Starcode: sequence clustering based on all-pairs search

|authorauthor1=Zorita E, |author2=Cuscó P, |author3=Filion GJ. |journal=Bioinformatics.

|journal=Bioinformatics.

|date=Jun 2015 |volume=31

|issue=12 |pages=1913–1919

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* OrthoFinder:<ref>{{cite web|url=http://www.stevekellylab.com/software/orthofinder|title=OrthoFinder|work=Steve Kelly Lab}}</ref> a fast, scalable and accurate method for clustering proteins into gene families (orthogroups)<ref>{{cite journal

|title=OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy.

|authorauthor1=Emms DM, |author2=Kelly S. |journal=Genome Biology.

|journal=Genome Biology.

| date=Aug 2015 |volume=16

|issue=157

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* TribeMCL: a method for clustering proteins into related groups<ref>{{cite journal

|title=An efficient algorithm for large-scale detection of protein families.

|authorauthor1=Enright AJ, |author2=Van Dongen S, |author3=Ouzounis CA. |journal=Nucleic Acids Res.

|journal=Nucleic Acids Res.

| date=Apr 2002 |volume=30

|issue=7