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Line 10: == External links == * [http://cm.jefferson.edu/CLIPSim-MC/ CLIPSim-MC]: CLIPSim-MC is a tool that uses CLIP-seq data to find [[miRNA]]/MRE pairings using a Monte-Carlo-based approach.<ref>{{citation \|journal=Scientific Reports \|author1=Peter M. Clark \|author2=Phillipe Loher \|author3=Kevin Quann \|author4=Jonathan Brody \|author5=Eric R. Londin \|author6=Isidore Rigoutsos \|title=Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types \|volume=4 \|issue=5947 \|year=2014 \|PMID=25103560 \|doi=10.1038/srep05947 \|pmc=4894423}}</ref> * [http://starbase.sysu.edu.cn/ starBase database]: a database for exploring miRNA-mRNA, miRNA-[[lncRNA]], miRNA-[[sncRNA]], miRNA-[[circRNA]], miRNA-[[pseudogene]], protein-[[lncRNA]], '''[[protein-RNA]]''' interactions and [[ceRNA]] networks from '''HITS-CLIP''' ('''[[CLIP-Seq]]''', '''PAR-CLIP''', '''[[iCLIP]]''', '''CLASH''') data, and '''[http://www.targetscan.org TargetScan]'''<ref>{{Cite journal\|title = Predicting effective microRNA target sites in mammalian mRNAs\|url = http://elifesciences.org/content/4/e05005\|journal = eLife\|date = 2015-08-12\|issn = 2050-084X\|pmc = 4532895\|pmid = 26267216\|pages = e05005\|volume = 4\|doi = 10.7554/eLife.05005\|language = en\|first = Vikram\|last = Agarwal\|first2 = George W.\|last2 = Bell\|first3 = Jin-Wu\|last3 = Nam\|first4 = David P.\|last4 = Bartel}}</ref>''', PicTar, RNA22, miRanda and PITA''' microRNA target sites. * [http://www.clipz.unibas.ch/ clipz]: a pipeline to analyze short RNA reads from HITS-CLIP experiments.

HITS-CLIP: Difference between revisions