Structural alignment: Difference between revisions

Revision as of 22:52, 19 November 2004

Revision as of 22:54, 19 November 2004

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|-

| VAST

| '''V'''ector '''A'''lignment '''S'''earch '''T'''ool || SSSSE || Pair || [http://www.ncbi.nih.gov/Structure/VAST/vastsearch.html server] || S. Bryant || 1996

|-

| PrISM

| '''P'''rotein '''I'''nformatics '''S'''ystems for '''M'''odeling || SSSSE || Multi || [http://honiglab.cpmc.columbia.edu server] || B. Honig || 2000

|-

| SSAP

| '''S'''equential '''S'''tructure '''A'''lignment '''P'''rogram || SSSSE || Multi || [http://www.biochem.ucl.ac.uk/cgi-bin/cath/GetSsapRasmol.pl server] || C. Orengo || 1989

|-

| SARF2

| '''S'''patial '''A'''rrangements of '''B'''ackbone '''F'''ragments || SSSSE || Pair ||[http://123d.ncifcrf.gov/sarf2.html server] || D. Fischer || 1996

|-

| KENOBI/K2

|NA||SSSSE||Pair || [http://zlab.bu.edu/k2/ server] || Z. Weng || 2000

|-

|STAMP

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|-

| MASS

| '''M'''ultiple '''A'''lignment by '''S'''econdary '''S'''tructure || SSSSE || Multi || [http://bioinfo3d.cs.tau.ac.il/MASS server] || R. Nussinov || 2003

|-

| MALECON

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'''KEY MAP:'''

* '''Cα''' -- Backbone (Cα) Alignment;

* '''SSSSE''' -- Secondary Structure Element Alignment;

* '''Pair''' -- Pairwise Alignment (2 structures *only*);

* '''Multi''' -- Multiple Structure Alignment (MStA);