Revision as of 14:08, 18 August 2017 edit Headbomb (talk \| contribs) Edit filter managers, Autopatrolled, Extended confirmed users, Page movers, File movers, New page reviewers, Pending changes reviewers, Rollbackers, Template editors 473,084 edits →Sequence clustering algorithms and packages: clean up, journal names, mostly, replaced: journal=Genome Biology. → journal=Genome Biology using AWB ← Previous edit		Revision as of 16:04, 11 September 2017 edit undo KolbertBot (talk \| contribs) Bots 1,166,042 edits m Bot: HTTP→HTTPS Next edit →
Line 51: * JESAM:<ref>{{cite web\|url=http://www.littlest.co.uk/software/bioinf/old_packages/jesam/jesam_paper.html\|title=Bioinformatics Paper: JESAM: CORBA software components for EST alignments and clusters\|work=littlest.co.uk}}</ref> Open source parallel scalable DNA alignment engine with optional clustering software component * UICluster:<ref>http://ratest.eng.uiowa.edu/pubsoft/clustering/</ref> Parallel Clustering of EST (Gene) Sequences * BLASTClust single-linkage clustering with BLAST<ref>{{cite web\|url=~~http~~https://www.ncbi.nlm.nih.gov/Web/Newsltr/Spring04/blastlab.html\|title=NCBI News: Spring 2004-BLASTLab\|work=nih.gov}}</ref> * (Multi)netclust:<ref>{{cite web\|url=http://www.bioinformatics.nl/netclust/\|title=WUR Multi-netclust web server\|work=bioinformatics.nl}}</ref> fast and memory-efficient detection of connected clusters in (multi-parametric) data networks<ref>{{cite journal \|title=Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks Line 65: * Clusterer:<ref>{{cite web\|url=http://bugaco.com/bioinf/clusterer/\|title=Clusterer: extendable java application for sequence grouping and cluster analyses\|work=bugaco.com}}</ref> extendable java application for sequence grouping and cluster analyses * PATDB: a program for rapidly identifying perfect substrings * nrdb:<ref>~~http~~https://web.archive.org/web/20080101032917/http://blast.wustl.edu/pub/nrdb/</ref> a program for merging trivially redundant (identical) sequences * CluSTr:<ref>http://www.ebi.ac.uk/clustr/</ref> A single-linkage protein sequence clustering database from Smith-Waterman sequence similarities; covers over 7 mln sequences including UniProt and IPI * ICAtools<ref>{{cite web\|url=http://www.littlest.co.uk/software/bioinf/old_packages/icatools/\|title=Introduction to the ICAtools\|work=littlest.co.uk}}</ref> - original (ancient) DNA clustering package with many algorithms useful for artifact discovery or EST clustering

Sequence clustering: Difference between revisions