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* Molecule activity
* Predicting binding sites of [[Calmodulin]] binding proteins <ref>{{cite journal|last1=Minhas|first1=Fayyaz|title=Multiple instance learning of Calmodulin binding sites,|journal=Bioinformatics|date=2012|volume=28|issue=18|pages=i416–i422|page=i416-i422i416–i422|url=http://bioinformatics.oxfordjournals.org/content/28/18/i416.short|doi=10.1093/bioinformatics/bts416|pmid=22962461|pmc=3436843}}</ref>
* Predicting function for alternatively spliced isoforms {{harvtxt|Li|Menon|et al.|2014}},{{harvtxt|Eksi|Li|Menon|et al.|2013}}
* Image classification {{harvtxt|Maron|Ratan|1998}}
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| title = Multiple Instance Learning - Foundations and Algorithms
| publisher = Springer
| year = 2016 | doi = 10.1007/978-3-319-47759-6}}.| isbn = 978-3-319-47758-9
}}.
 
*{{citation
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| year= 2014 | id = {{pii|S0168-9525(14)00085-7}}
| journal = Trends in Genetics
| doi = 10.1016/j.tig.2014.05.005 | pmid=24951248 | volume=30 | issue = 8
| pages=340–347|display-authors=etal | pmc=4112133}}.
 
*{{citation
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| first3 = R. | last3 = Menon
| title= Systematically differentiating functions for alternatively spliced isoforms through integrating RNA-seq data
| year= 2013 | pages = Nov;9(11):e1003314
| journal = PLoS Comput Biol
| doi = 10.1371/journal.pcbi.1003314 | pmid=24244129 | pmc=3820534 | volume=9| issue = 11
|display-authors=etal}}.
 
*{{citation
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| doi = 10.1145/2783258.2783380
| work= Proceedings of the 21st ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
| chapter = From Group to Individual Labels Using Deep Features
}}.
| isbn = 9781450336642
}}.
 
*{{cite conference