Brain Imaging Data Structure: Difference between revisions

Revision as of 20:47, 11 March 2019

Revision as of 15:39, 7 April 2019

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The '''Brain Imaging Data Structure''' ('''BIDS)''') is a standard for organizing, annotation, and describing data collected during [[neuroimaging]] experiments. It is based on a formalized file/folder structure and [[JSON]] based metadata files with [[controlled vocabulary]].<ref>{{cite journal|journal=Scientific Data|volume=3|doi=10.1038/sdata.2016.44 |title=The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments|author=Krzysztof J|display-authors=et al |pmid=27326542 }}</ref>

This standard has been adopted by dozensa multitude of labs around the world as well as databases such as [[OpenfMRIOpenNeuro]], SchizConnect, Developing Human Connectome Project, and FCP-INDI, and is seeing uptake in an increasing number of studies.<ref>Poldrack, R. A., et al. "A phenome-wide examination of neural and cognitive function." Scientific data 3 (2016): 160110.</ref><ref>Bigdely-Shamlo, Nima, Scott Makeig, and Kay A. Robbins. "Preparing laboratory and real-world EEG data for large-scale analysis: a containerized approach." Frontiers in neuroinformatics 10 (2016): 7.</ref><ref>Nichols, Thomas E., et al. "Best practices in data analysis and sharing in neuroimaging using MRI." Nature neuroscience 20.3 (2017): 299.</ref>

While originally specified for [[Magnetic_resonance_imaging|MRI]] data, BIDS has been extended to several other imaging modalities such as [[Magnetoencephalography|MEG]]<ref>{{cite journal |last1=Niso |first1=Guiomar |last2=Gorgolewski |first2=Krzysztof J. |last3=Bock |first3=Elizabeth |last4=Brooks |first4=Teon L. |last5=Flandin |first5=Guillaume |last6=Gramfort |first6=Alexandre |last7=Henson |first7=Richard N. |last8=Jas |first8=Mainak |last9=Litvak |first9=Vladimir |last10=T. Moreau |first10=Jeremy |last11=Oostenveld |first11=Robert |last12=Schoffelen |first12=Jan-Mathijs |last13=Tadel |first13=Francois |last14=Wexler |first14=Joseph |last15=Baillet |first15=Sylvain |title=MEG-BIDS, the brain imaging data structure extended to magnetoencephalography |journal=Scientific Data |date=19 June 2018 |volume=5 |pages=180110 |doi=10.1038/sdata.2018.110}}</ref>, [[Electroencephalography|EEG]], and [[Electrocorticography|intracranial EEG]].

== References ==

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[[Category:Data management]]

[[Category:Magnetic resonance imaging]]

[[Category:Electrophysiology]]

[[Category:Neuroimaging]]