Structure validation: Difference between revisions

Revision as of 09:16, 6 March 2020

Revision as of 09:19, 6 March 2020

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* [[List of biophysically important macromolecular crystal structures]]

== References ==

===Software and websites===

{{Reflist|30em}}

== External links ==

* Computational prediction

** [http://predictioncenter.org/ CASP experiments home page]

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** [http://vadar.wishartlab.com/ VADAR - Volume, Area, Dihedral Angle Reporter]

* NMR

** [http://psvs-1_4-dev.nesg.org/ PSVS (Protein Structure Validation Server at the NESG)]<ref name="HuangPowers2005">{{cite journal | vauthors = Huang YJ, Powers R, Montelione GT | title = Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics | journal = Journal of the American Chemical Society | volume = 127 | issue = 6 | pages = 1665–74 | date = February 2005 | pmid = 15701001 | doi = 10.1021/ja047109h }}</ref>

** [http://code.google.com/p/cing/ CING (Common Interface for NMR structure Generation) software]

** [http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/ ProCheck] - stereochemical quality check for X-ray and NMR<ref name=procheck/><ref>{{cite journal | vauthors = Laskowski RA, Rullmannn JA, MacArthur MW, Kaptein R, Thornton JM | title = AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR | journal = Journal of Biomolecular NMR | volume = 8 | issue = 4 | pages = 477–86 | date = December 1996 | pmid = 9008363 | doi = 10.1007/bf00228148 }}</ref>

** [http://spin.niddk.nih.gov/bax/nmrserver/talos/ TALOS+ Software & Server] (server for predicting protein backbone torsion angles from chemical shift)

** [http://vadar.wishartlab.com/ VADAR - Volume, Area, Dihedral Angle Reporter]

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** [http://emdatabank.org/deposit.html EM Data Bank, for EM map deposition]

** [http://www.wwpdb.org/em/ EMDB at the PDB, info on ftp download of maps]

=== Link references ===

{{reflist}}

== References ==

{{Reflist|30em}}

== External links ==

{{Empty section|date=February 2020}}

== Further reading ==