Sequence clustering: Difference between revisions

Revision as of 20:54, 21 October 2004

Revision as of 18:00, 21 January 2005

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Generally, the clustering algorithms are [[single linkage clustering]], constructing a [[transitive closure]] of sequences with a similarity over a particular threshold. The similarity score is often based on [[sequence alignment]].

Sequence clustering is often used to make a [[Non redundant sequence|non-redundant]] set of [[representative sequences]] sequences.