Bioinformatics workflow management system: Difference between revisions

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* [[KNIME]] the Konstanz Information Miner<ref>{{Cite journal | doi = 10.1016/j.compbiolchem.2007.08.009| pmid = 17931570| title = Workflow based framework for life science informatics| journal = Computational Biology and Chemistry| year = 2007| volume=31| issue = 5–6| pages=305–319| last1 = Tiwari| first1 = Abhishek| last2 = Sekhar| first2 = Arvind K.T.}}</ref>

* [[OnlineHPC]] Online workflow designer based on [[Taverna workbench|Taverna]]{{citation needed|date=September 2016}}

* [https://www.nextflow.io/ Nextflow]: Is a reactive workflow framework and a programming [[Domain-specific language|DSL]] that eases the writing of data-intensive computational pipeline <ref>{{Cite journal|last=Di Tommaso|first=Paolo|last2=Chatzou|first2=Maria|last3=Floden|first3=Evan W|last4=Barja|first4=Pablo Prieto|last5=Palumbo|first5=Emilio|last6=Notredame|first6=Cedric|date=April 2017|title=Nextflow enables reproducible computational workflows|url=http://www.nature.com/articles/nbt.3820|journal=Nature Biotechnology|language=en|volume=35|issue=4|pages=316–319|doi=10.1038/nbt.3820|issn=1087-0156}}</ref>

*[[OnlineHPC]] Online workflow designer based on [[Taverna workbench|Taverna]]{{citation needed|date=September 2016}}

*[https://www.partek.com/partek-flow/ Partek Flow]: Web-based bioinformatics analysis platform with robust functionality and flexibility

*[[UGENE]] provides a workflow management system that is installed on a local computer<ref>{{Cite journal

| pmid = 22368248