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→Pairwise alignment: Updated the name to include the application |
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Line 146:
| DNADot
| Web-based dot-plot tool || Nucleotide || Global || R. Bowen || 1998
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| MegAlign Pro (Lasergene Molecular Biology)▼
| Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. || Both || Both ||[[DNASTAR]] ||1993-2016▼
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| DOTLET
Line 195 ⟶ 192:
| MCALIGN2
| explicit models of indel evolution || DNA || Global || J. Wang ''et al.'' || 2006
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▲| MegAlign Pro (Lasergene Molecular Biology)
▲| Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. || Both || Both ||[[DNASTAR]] ||1993-2016
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| MUMmer
Line 336:
| [[DNADynamo]]
| linked DNA to Protein [[Multiple sequence alignment|multiple alignment]] with [[MUSCLE (alignment software)|MUSCLE]], [[Clustal]] and Smith-Waterman|| Both || Local or global || DNADynamo || 2004 (newest version 2017) ||
|-▼
| MegAlign Pro (Lasergene Molecular Biology)▼
| Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. || Both || Local or global ||[[DNASTAR]] || 1993-2016 ||▼
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| EDNA
Line 368 ⟶ 365:
| [[MAVID]]
| Progressive alignment || Both || Global || N. Bray and [[Lior Pachter|L. Pachter]] || 2004 ||
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▲| MegAlign Pro (Lasergene Molecular Biology)
▲| Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. || Both || Local or global ||[[DNASTAR]] || 1993-2016 ||
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| MSA
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