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The '''sequential structure alignment program (SSAP)''' in [[chemistry]], [[physics]], and [[biology]] is a method that uses double [[dynamic programming]] to produce a structural alignment based on atom-to-atom [[Vector (geometric)|vectors]] in structure space.<ref>{{Cite journal
| last1 = Taylor | first1 = W. R.
| last2 = Orengo | first2 = C. A.
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