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* GenPipes A flexible and powerful Python-based framework that facilitates the development and deployment of multi-step genomic workflows, optimized for High-Performance Computing (HPC) clusters and the cloud
* Snakemake python-driven implimentation of the [[Make (software)|Makefile]] for automatic compilation and exectution of workflows
* Nextflow
* [[VisTrails]]<ref>{{Cite book | doi = 10.1109/VISUAL.2005.1532788 | title = VisTrails: enabling interactive multiple-view visualizations| year = 2005 | journal=VIS 05. IEEE Visualization, 2005.| pages = 135–142| last1 = Bavoil| first1 = L.| last2 = Callahan| first2 = S.P.| last3 = Crossno| first3 = P.J.| last4 = Freire| first4 = J.| last5 = Scheidegger| first5 = C.E.| last6 = Silva| first6 = C.T.| last7 = Vo| first7 = H.T.| isbn = 978-0-7803-9462-9}}</ref>
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