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* [[GenPipes]] A flexible Python-based framework that facilitates the development and deployment of multi-step genomic workflows, optimized for High-Performance Computing (HPC) clusters and the cloud <ref>{{Cite journal |last=Bourgey |first=Mathieu |last2=Dali |first2=Rola |display-authors=etal |date=June 2019 |title=GenPipes: an open-source framework for distributed and scalable genomic analyses |url=https://academic.oup.com/gigascience/article/8/6/giz037/5513895 |journal=GigaScience |volume=Volume 8, Issue 6}}</ref>
* [[KNIME]] the Konstanz Information Miner<ref>{{Cite journal | doi = 10.1016/j.compbiolchem.2007.08.009| pmid = 17931570| title = Workflow based framework for life science informatics| journal = Computational Biology and Chemistry| year = 2007| volume=31| issue = 5–6| pages=305–319| last1 = Tiwari| first1 = Abhishek| last2 = Sekhar| first2 = Arvind K.T.}}</ref>
* [[OnlineHPC]] Online workflow designer based on [[Taverna workbench|Taverna]]{{citation needed|date=September 2016}}
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