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Line 21: * PATDB: a program for rapidly identifying perfect substrings * nrdb:<ref>{{Cite web \| url=http://blast.wustl.edu/pub/nrdb/ \| title=Index of /pub/nrdb\| archive-url=https://web.archive.org/web/20080101032917/http://blast.wustl.edu/pub/nrdb/\| archive-date=2008-01-01}}</ref> a program for merging trivially redundant (identical) sequences * CluSTr:<ref>{{cite web \|url=http://www.ebi.ac.uk/clustr/ \|title=~~Archived copy~~CluSTr \|access-date=2006-11-23 \|url-status=dead \|archive-url=https://web.archive.org/web/20060924012903/http://www.ebi.ac.uk/clustr/ \|archive-date=2006-09-24 }}</ref> A single-linkage protein sequence clustering database from Smith-Waterman sequence similarities; covers over 7 mln sequences including UniProt and IPI * ICAtools<ref>{{cite web\|url=http://www.littlest.co.uk/software/bioinf/old_packages/icatools/\|title=Introduction to the ICAtools\|work=littlest.co.uk}}</ref> - original (ancient) DNA clustering package with many algorithms useful for artifact discovery or EST clustering * Skipredudant EMBOSS tool<ref>{{cite web\|url=http://bioweb2.pasteur.fr/docs/EMBOSS/skipredundant.html\|title=EMBOSS: skipredundant\|work=pasteur.fr}}</ref> to remove redundant sequences from a set

Sequence clustering: Difference between revisions