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Line 47: \|- \|Chaste<ref>{{cite journal \|vauthors=Pitt-Francis J, Bernabeu MO, Cooper J, Garny A, Momtahan L, Osborne J, Pathmanathan P, Rodriguez B, Whiteley JP, Gavaghan DJ \|date=September 2008 \|title=Chaste: using agile programming techniques to develop computational biology software \|url=http://eprints.maths.ox.ac.uk/846 \|journal=Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences \|volume=366 \|issue=1878 \|pages=3111–36 \|doi=10.1016/j.cpc.2009.07.019 \|pmid=18565813 \|archive-url=https://web.archive.org/web/20151120234903/http://eprints.maths.ox.ac.uk/846/ \|archive-date=2015-11-20 \|access-date=2019-02-01 \|author16-link=Sarah L. Waters}}</ref><ref>{{cite journal \|vauthors=Mirams GR, Arthurs CJ, Bernabeu MO, Bordas R, Cooper J, Corrias A, Davit Y, Dunn SJ, Fletcher AG, Harvey DG, Marsh ME, Osborne JM, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan DJ \|date=14 March 2013 \|title=Chaste: an open source C++ library for computational physiology and biology \|journal=PLOS Computational Biology \|volume=9 \|issue=3 \|pages=e1002970 \|bibcode=2013PLSCB...9E2970M \|doi=10.1371/journal.pcbi.1002970 \|pmc=3597547 \|pmid=23516352}}</ref> \|~~center~~Center/agent-based, on-/off-lattice, cellular automata, vertex-based, immersed boundary \|2D, 3D \|https://github.com/Chaste/Chaste Line 119: \|- \|PhysiCell<ref>{{cite journal \|vauthors=Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P \|date=February 23, 2018 \|title=PhysiCell: an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems \|journal=PLOS Computational Biology \|volume=14 \|issue=2 \|pages=e1005991 \|bibcode=2018PLSCB..14E5991G \|doi=10.1371/journal.pcbi.1005991 \|pmc=5841829 \|pmid=29474446}}</ref> \|Center/agent-based, ODE \|3D \|https://github.com/MathCancer/PhysiCell Line 128: \|- \|Biocellion<ref>{{cite journal \|vauthors=Kang S, Kahan S, McDermott J, Flann N, Shmulevich I \|date=November 2014 \|title=Biocellion: accelerating computer simulation of multicellular biological system models \|journal=Bioinformatics \|volume=30 \|issue=21 \|pages=3101–3108 \|doi=10.1093/bioinformatics/btu498 \|pmc=4609016 \|pmid=25064572}}</ref><ref>{{Cite web \|title=biocellion \|url=https://biocellion.com/ \|access-date=2022-04-05 \|website=biocellion \|language=en-US}}</ref> \|Center/agent-based \| \| \|No Line 137: \|- \|Timothy \|Center/agent-based \|3D \|<s>http://timothy.icm.edu.pl/downloads.html</s> Line 164: \|- \|CBMOS \|Center/agent-based \| \|https://github.com/somathias/cbmos Line 182: \|- \|[https://github.com/torressancheza/ias Interacting Active Surfaces] \|[[Finite element method\|FEM]], ODE solvers \|3D \|https://github.com/torressancheza/ias Line 236: \|- \|4DFUCCI \|Center/agent-based \|3D \|https://github.com/ProfMJSimpson/4DFUCCI

Cell-based models: Difference between revisions