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Line 80: \| \|} * ~~“Consumes~~"Consumes ~~query”~~query" and ~~“consumes~~"consumes ~~reference”~~reference" indicate whether the CIGAR operation causes the alignment to step along the query sequence and the reference sequence respectively. * H can only be present as the first and/or last operation. * S may only have H operations between them and the ends of the CIGAR string.

Sequence alignment: Difference between revisions