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JimProcter (talk | contribs) →See also: more categories |
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| [[GPL]]
| [http://3d-alignment.eu/ link]
|-
| ClustalX viewer
| No
| Clustalw
| [[Neighbor-joining]]
| Alignment quality analysis
| [[Nexus format|NEXUS]], [[MSF format|MSF]], [[Clustal]], [[FASTA format|FASTA]], [[PHYLIP format|PHYLIP]]
| Free for academic users
| [http://www.clustal.org/ link]
|-
| VISSA sequence/structure viewer
| DSSP secondary structure
| ClustalX
| No
| Mapping from sequence to 3D structure
| [[Clustal]], [[FASTA format|FASTA]]
| Free
| [http://bioinformatics.burnham.org/liwz/vissa/ link]
|-
| Seaview
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|
| [http://packages.debian.org/testing/science/biomode link]
|-
| CINEMA
| NO, but can read/show 2D structure annotations
| ClustalW
| No
| Dotplot, 6 frame translation, Blast
| [[Nexus format|NEXUS]], [[MSF format|MSF]], [[Clustal]], [[FASTA format|FASTA]], [[PHYLIP format|PHYLIP]], [[PIR format|PIR]], PRINTS
| Free
| [http://www.bioinf.manchester.ac.uk/dbbrowser/CINEMA2.1/ link]
|-
| PFAAT
| NO, but can display 3D structures
| ClustalW
| [[Neighbor-joining]]
| Manual annotation, conservation scores
| [[Nexus format|NEXUS]], [[MSF format|MSF]], [[Clustal]], [[FASTA format|FASTA]], PFAAT
| Free
| [http://pfaat.sourceforge.net/ link]
|-
| S2S RNA editor
| 2D structure
| Rnalign
| No
| base-base interactions,2D,3D viewer
| [[FASTA format|FASTA]], RnaML
| Free
| [http://bioinformatics.org/S2S/ link]
|-
|}
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