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* [http://www.ebi.ac.uk/clustr/ CluSTr: A single-linkage protein sequence clustering database from Smith-Waterman sequence similarities; covers over 7 mln sequences including UniProt and IPI]
* [http://athena.bioc.uvic.ca/tools/VOCS Virus Orthologous Clusters: A viral protein sequence clustering database; contains all predicted genes from eleven virus families organized into ortholog groups by BLASTP similarity]
* [http://www.drive5.com/uclust: An exceptionally fast sequence clustering program for nucleotide and protein sequences]
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