Revision as of 07:01, 3 February 2010 edit Wikipodium (talk \| contribs) 103 edits m →Small Molecule Interaction Database (SMID): corrected misspelling ← Previous edit		Revision as of 07:01, 3 February 2010 edit undo Wikipodium (talk \| contribs) 103 edits m →Small Molecule Interaction Database (SMID): another misspelling Next edit →
Line 10: ==Small Molecule Interaction Database (SMID)== The [[Small Molecule]] Interaction Database is a database containing protein ___domain-small molecule interactions. It uses a ___domain-based approach to identify ___domain families, found in the Conserved Domain Database ([[CDD]]), which interact with a query small molecule. The ~~CCD~~CDD from [[National Center for Biotechnology Information\|NCBI]] amalgamates data from several different sources; [[Protein FAMilies]] (PFAM), [[Simple Modular Architecture Research Tool]] (SMART), [[Cluster of Orthologous Genes]] (COGs), and NCBI’s own curated sequences. The data in SMID is derived from the Protein Data Bank (PDB), a database of known protein crystal structures. SMID can be queried by entering a protein GI, ___domain identifier, PDB ID or SMID ID. The results of a search provide small molecule, protein, and ___domain information for each interaction identified in the database. Interactions with non-biological contacts are normally screened out by default.

Biomolecular Object Network Databank: Difference between revisions