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==References==
*Biological Papers:
**Margulies, Marcel., Egholm, Michael., Altman, William E., Attiya, Said., Bader, Joel S., Bemben, Lisa A., Berka, Jan., Braverman, Michael S., Chen, Yi-Ju., Chen, Zhoutao., Dewell, Scott B., Du, Lei., Fierro, Joseph M. et al. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature., 437, 376-380.
*Folding Papers:
**Tropsha, Alexander & Edelsbrunner, Herbert. Biogeometry Applications of Computational Geometry to Molecular Structure. School of Pharmacy, University of North Carolina.
**Bowie, James U. (2005). Solving the Membrane Protein- Folding Problem. Nature. 438, 581-589.
*Docking Papers:
**Ansari, Sam & Helms, Volkhard. (2005). Statistical Analysis of Predominantly Transient Protein-Protein Interfaces. Proteins: Structure, Function and Bioinformatics., 64, 344-355.
**Kim, Wan Kyu & Ison, Jon C. (2005). Survey of the Geometric Association of Domain-Domain Interfaces. Proteins., 61(4), 1075- 1088.
**Mooney, Sean D., Liang, Mike Hsing-Ping., Deconde, Rob & Altman, Ross B. (2005). Structural Characterization of Proteins Using Residue Environments. Proteins: Structure, Function and Bioinformatics., 61, 741-747.
**Terashi, Genki., Takeda-Shitaka, Mayuko., Takaya, Daisuke., Komatsu, Katsuichiro & Umeyama, Hideaki. (2005). Searching for Protein-Protein Interaction Sites and Docking by Mothods of Molecular Dynamics, Grid Scoring, and the Pairwise Interaction Potential of Amino Acid Residues. Proteins: Structure, Function and Bioinformatics., 60, 289-295.
*Sequence Papers:
**Chinnasamy, Arunkumar., Mittal, Ankush & Sung, Wing-Kin. (2005). Probabilistic prediction of protein–protein interactions from the protein sequences. Computers in Biology and Medicine., 1-12.
**Nanni, Loris. (2005). Hyperplanes for Predicting Protein-Protein Interactions. Neurocomputing., 69, 257-263.
**Chen, Xue-wen & Liu, Mei. (2005). Prediction of Protein-Protein Interactions Using Random Decision Forest Framework. Bioinformatics, 1-4.
**Han, Dong-soo., Kim, Hong-soo., Jang, Wong –Hyuk., Lee, Sung-Doke & Suh, Jung-Keun.(2004). PreSPI: a ___domain combination based prediction system for protein–protein interaction. Nucleic Acids Research., 32(21), 6312-6320.
*Vector Learning Papers:
**Ling Lo, Siaw., Cai Zhong, Cong., Chen, Yu Zong & Chung, Maxey C. M. (2005). Effect of training datasets on support vector machine prediction of protein-protein interactions. Proteomics., 5, 876-884.
**Gao, Qing-Bin & Wang, Zheng-Zhi. (2005). Using Nearest Feature Line and Tunable Nearest Neighbor methods for prediction of protein subcellular locations. Computational Biology and Chemistry., 29, 388-392.
**Webb-Robertson, Bobbie-Jo., Oehmen, Christopher & Matzke, Melissa. (2005).
**SVM-BALSA Remote homology detection based on Bayesian sequence alignment. Computation Biology and Chemistry., 29, 440-443.
**Dubey, Anshul., Realff, Matthew J., Lee, Jay H. & Bommarius, Andreas S. (2005).Support vector machines for learning to identify the critical positions of a protein. Journal of Theoretical Biology., 234, 351-361.
*Review Papers:
**Uetz, Peter & Vollert, Carolina S. Protein-Protein Interactions. (2005) Encyclopedic References of Genomics and Proteomics in Molecular Medicine.
**Gomez, Manuel., Alonso-Allende, Ramón., Pazos, Florencio., Grana, Osvaldo., Juan, David.& Valencia, Alfonso. (2004). Accessible Protein Interaction Data for Network Modeling. Structure of the information and available repositories. Structural Bioinformatics group
**Wodak, Shoshana J. & Mendez, Raul. (2004). Prediction of Protein-Protein Interactions: the CAPRI Experiment, its evaluation and implications. Current Opinion in Structural Biology., 14, 242-249.
*Interactome Papers:
**Nabieva, Elena., Jim, Kam., Agarwal, Amit., Chazelle, Bernard & Singh, Mona. (2005).Whole-proteome Prediction of Protein Function Via Graph-Theoretic Analysis of Interaction Maps.Bioinformatics., 21, 302-310.
**Rhodes, David R., Tomlins, Scott A., Varambally, Sooryanarayana., Mahavisno, Vasudeva., Barrette, Terrence., Kalyana- Sundaram, Shanker., Ghosh, Debashis., Pandey, Alhilesh & Chinnaiyan, Arul M. (2005). Probabilistic model of the Human Protein-Protein Interaction Network. Nature Biotechnology., 23(8), 951-959.
==See also==
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