List of alignment visualization software: Difference between revisions

Revision as of 16:43, 6 January 2012

Revision as of 07:04, 29 February 2012

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| [[GPL]]

| [http://www.jalview.org/ link]

|-

| JEvTrace

| No but integrated with structure viewer [http://www.cmpharm.ucsf.edu/~walther/webmol.html WebMol]

| No

| No

| A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive [http://www.ncbi.nlm.nih.gov/pubmed/8609628 Evolutionary Trace] and other phylogeny inspired analysis.

| [[FASTA format|FASTA]], MSF, [http://en.wikipedia.org/wiki/Clustal Clustal], [[PHYLIP format|PHYLIP]], [[Newick format|Newick]], [http://en.wikipedia.org/wiki/Protein_Data_Bank_%28file_format%29 PDB]

| [[Free for academic use]]

| [http://compbio.berkeley.edu/people/marcin/jevtrace/ link] [http://compbio.berkeley.edu/people/marcin/jevtrace/jevtracev3.12_manual.pdf manual]

|-

| MEGA