Multiple sequence alignment: Difference between revisions

Revision as of 10:38, 7 April 2006

Revision as of 03:16, 30 April 2006

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There are many computer programs to produce multiple sequence alignments starting with a collection of unaligned sequences ([[Clustal|ClustalW]], [[T-Coffee]]) and to represent graphically those alignments ([[Clustal|ClustalW]], [http://www.sanger.ac.uk/Software/Pfam/help/belvu_setup.shtml Belvu]).

== References ==

=== Survey articles ===

*{{cite book

| first = L.

| last = Duret

| coauthors = S. Abdeddaim

| year = 2000

| chapter = Multiple alignment for structural functional or phylogenetic analyses of homologous sequences

| editor = D. Higgins and W. Taylor

| title = Bioinformatics sequence structure and databanks

| ___location = Oxford

| publisher = Oxford University Press

}}

*{{cite journal

| first = C.

| last = Notredame

| year = 2002

| title = Recent progresses in multiple sequence alignment: a survey

| journal = Pharmacogenomics

| volume = 31

| issue = 1

| pages = 131 -- 144

}}

*{{cite journal

| first = J. D.

| last = Thompson

| coauthors = F. Plewniak and O. Poch

| year = 1999

| title = A comprehensive comparison of multiple sequence alignment programs

| journal = Nucleic Acids Research

| volume = 27

| issue = 13

| pages = 12682--2690

}}

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{{bioinformatics-stub}}