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* [[BioBIKE]]
* [http://chipster.csc.fi/ Chipster]
* [[Discovery Net]]: one of the earliest examples of a scientific workflow system, later commercialized as InforSense which then acquired by IDBS.
* [[Galaxy (computational biology)|Galaxy]]: initially targeted at [[genomics]]
* [http://www.tavaxy.org Tavaxy] <ref>{{cite doi|10.1186/1471-2105-13-77}}</ref>: A cloud-based bioinformatics workflow system that integrates features from both Taverna and Galaxy for NGS data analysis.
* [[Taverna workbench]] <ref>{{cite doi|10.1093/bioinformatics/bth361}}</ref>: an early e-Science system widely used in bioinformatics
* [[VisTrails]]
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